BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-7*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
kshv-miR-K12-7-5p MIMAT0015217 Kaposi sarcoma-associated miR-K12... 16 6.9
oha-miR-458-5p MIMAT0036934 Ophiophagus hannah miR-458-5p 14 27
sma-miR-8437-5p MIMAT0033578 Schistosoma mansoni miR-8437-5p 14 27
ppc-miR-8331-5p MIMAT0033206 Pristionchus pacificus miR-8331-5p 14 27
ssa-miR-458-5p MIMAT0032647 Salmo salar miR-458-5p 14 27
bta-miR-6521 MIMAT0025539 Bos taurus miR-6521 14 27
pab-miR3711 MIMAT0018144 Picea abies miR3711 14 27
hsv1-miR-H17 MIMAT0014695 Herpes Simplex miR-H17 14 27
tgu-miR-458-5p MIMAT0026962 Taeniopygia guttata miR-458-5p 14 27
sme-miR-2160-5p MIMAT0011254 Schmidtea mediterranea miR-2160-5p 14 27
gga-miR-458a-5p MIMAT0007745 Gallus gallus miR-458a-5p 14 27
oan-miR-458-5p MIMAT0007009 Ornithorhynchus anatinus miR-458-5p 14 27
dre-miR-458-5p MIMAT0032005 Danio rerio miR-458-5p 14 27
>kshv-miR-K12-7-5p MIMAT0015217 Kaposi sarcoma-associated
miR-K12-7-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agcgccac 8
||||||||
Sbjct: 1 agcgccac 8
>oha-miR-458-5p MIMAT0036934 Ophiophagus hannah miR-458-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcgcca 7
|||||||
Sbjct: 1 agcgcca 7
>sma-miR-8437-5p MIMAT0033578 Schistosoma mansoni miR-8437-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcgcca 7
|||||||
Sbjct: 7 agcgcca 1
>ppc-miR-8331-5p MIMAT0033206 Pristionchus pacificus miR-8331-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcgccac 8
|||||||
Sbjct: 2 gcgccac 8
>ssa-miR-458-5p MIMAT0032647 Salmo salar miR-458-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcgcca 7
|||||||
Sbjct: 1 agcgcca 7
>bta-miR-6521 MIMAT0025539 Bos taurus miR-6521
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcgccac 8
|||||||
Sbjct: 7 gcgccac 1
>pab-miR3711 MIMAT0018144 Picea abies miR3711
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcgcca 7
|||||||
Sbjct: 7 agcgcca 1
>hsv1-miR-H17 MIMAT0014695 Herpes Simplex miR-H17
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcgcca 7
|||||||
Sbjct: 7 agcgcca 1
>tgu-miR-458-5p MIMAT0026962 Taeniopygia guttata miR-458-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcgcca 7
|||||||
Sbjct: 1 agcgcca 7
>sme-miR-2160-5p MIMAT0011254 Schmidtea mediterranea miR-2160-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcgcca 7
|||||||
Sbjct: 7 agcgcca 1
>gga-miR-458a-5p MIMAT0007745 Gallus gallus miR-458a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcgcca 7
|||||||
Sbjct: 1 agcgcca 7
>oan-miR-458-5p MIMAT0007009 Ornithorhynchus anatinus miR-458-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcgcca 7
|||||||
Sbjct: 1 agcgcca 7
>dre-miR-458-5p MIMAT0032005 Danio rerio miR-458-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcgcca 7
|||||||
Sbjct: 1 agcgcca 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 73
Number of extensions: 59
Number of successful extensions: 51
Number of sequences better than 100.0: 13
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
