BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h11*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tca-miR-3842-3p MIMAT0018729 Tribolium castaneum miR-3842-3p 14 20
hsv2-miR-H11-5p MIMAT0014697 Herpes Simplex miR-H11-5p 14 20
ggo-miR-523-3p MIMAT0036415 Gorilla gorilla miR-523-3p 12 80
eca-miR-9145 MIMAT0034721 Equus caballus miR-9145 12 80
eca-miR-8938 MIMAT0034467 Equus caballus miR-8938 12 80
pxy-miR-8544-5p MIMAT0033811 Plutella xylostella miR-8544-5p 12 80
stu-miR7122-3p MIMAT0030960 Solanum tuberosum miR7122-3p 12 80
prd-miR-7971-5p MIMAT0030844 Panagrellus redivivus miR-7971-5p 12 80
mmu-miR-7648-5p MIMAT0029798 Mus musculus miR-7648-5p 12 80
mdo-miR-7362-5p MIMAT0028736 Monodelphis domestica miR-7362-5p 12 80
ame-miR-3723 MIMAT0018589 Apis mellifera miR-3723 12 80
cin-miR-4067-3p MIMAT0016623 Ciona intestinalis miR-4067-3p 12 80
ppy-miR-614 MIMAT0016055 Pongo pygmaeus miR-614 12 80
ppy-miR-523 MIMAT0015979 Pongo pygmaeus miR-523 12 80
aly-miR839-3p MIMAT0017624 Arabidopsis lyrata miR839-3p 12 80
aly-miR397b-3p MIMAT0017564 Arabidopsis lyrata miR397b-3p 12 80
cte-miR-1998 MIMAT0009709 Capitella teleta miR-1998 12 80
ptr-miR-614 MIMAT0008276 Pan troglodytes miR-614 12 80
ptr-miR-523 MIMAT0008207 Pan troglodytes miR-523 12 80
ppt-miR1040 MIMAT0005150 Physcomitrella patens miR1040 12 80
hsa-miR-614 MIMAT0003282 Homo sapiens miR-614 12 80
hsa-miR-523-3p MIMAT0002840 Homo sapiens miR-523-3p 12 80
>tca-miR-3842-3p MIMAT0018729 Tribolium castaneum miR-3842-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agcgttc 7
|||||||
Sbjct: 7 agcgttc 1
>hsv2-miR-H11-5p MIMAT0014697 Herpes Simplex miR-H11-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agcgttc 7
|||||||
Sbjct: 2 agcgttc 8
>ggo-miR-523-3p MIMAT0036415 Gorilla gorilla miR-523-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 6 gcgttc 1
>eca-miR-9145 MIMAT0034721 Equus caballus miR-9145
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgtt 6
||||||
Sbjct: 3 agcgtt 8
>eca-miR-8938 MIMAT0034467 Equus caballus miR-8938
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgttc 7
||||||
Sbjct: 3 gcgttc 8
>pxy-miR-8544-5p MIMAT0033811 Plutella xylostella miR-8544-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agcgtt 6
||||||
Sbjct: 6 agcgtt 1
>stu-miR7122-3p MIMAT0030960 Solanum tuberosum miR7122-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgtt 6
||||||
Sbjct: 3 agcgtt 8
>prd-miR-7971-5p MIMAT0030844 Panagrellus redivivus miR-7971-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgtt 6
||||||
Sbjct: 1 agcgtt 6
>mmu-miR-7648-5p MIMAT0029798 Mus musculus miR-7648-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcgttc 7
||||||
Sbjct: 3 gcgttc 8
>mdo-miR-7362-5p MIMAT0028736 Monodelphis domestica miR-7362-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgtt 6
||||||
Sbjct: 3 agcgtt 8
>ame-miR-3723 MIMAT0018589 Apis mellifera miR-3723
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgtt 6
||||||
Sbjct: 3 agcgtt 8
>cin-miR-4067-3p MIMAT0016623 Ciona intestinalis miR-4067-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgtt 6
||||||
Sbjct: 1 agcgtt 6
>ppy-miR-614 MIMAT0016055 Pongo pygmaeus miR-614
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 6 gcgttc 1
>ppy-miR-523 MIMAT0015979 Pongo pygmaeus miR-523
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 6 gcgttc 1
>aly-miR839-3p MIMAT0017624 Arabidopsis lyrata miR839-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 6 gcgttc 1
>aly-miR397b-3p MIMAT0017564 Arabidopsis lyrata miR397b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agcgtt 6
||||||
Sbjct: 3 agcgtt 8
>cte-miR-1998 MIMAT0009709 Capitella teleta miR-1998
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 8 gcgttc 3
>ptr-miR-614 MIMAT0008276 Pan troglodytes miR-614
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 6 gcgttc 1
>ptr-miR-523 MIMAT0008207 Pan troglodytes miR-523
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 6 gcgttc 1
>ppt-miR1040 MIMAT0005150 Physcomitrella patens miR1040
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 7 gcgttc 2
>hsa-miR-614 MIMAT0003282 Homo sapiens miR-614
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 6 gcgttc 1
>hsa-miR-523-3p MIMAT0002840 Homo sapiens miR-523-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcgttc 7
||||||
Sbjct: 6 gcgttc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 29
Number of extensions: 27
Number of successful extensions: 22
Number of sequences better than 100.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
