BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= kshv-miR-k12-5*
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

kshv-miR-K12-5-5p MIMAT0015218 Kaposi sarcoma-associated miR-K12...    16   6.9  
oha-miR-196c-5p MIMAT0036787 Ophiophagus hannah miR-196c-5p            14      27
oha-miR-196b-5p MIMAT0036785 Ophiophagus hannah miR-196b-5p            14      27
oha-miR-196a-5p MIMAT0036783 Ophiophagus hannah miR-196a-5p            14      27
tch-miR-196a-5p MIMAT0036623 Tupaia chinensis miR-196a-5p              14      27
chi-miR-196b MIMAT0036033 Capra hircus miR-196b                        14      27
chi-miR-196a MIMAT0036032 Capra hircus miR-196a                        14      27
efu-miR-196 MIMAT0035121 Eptesicus fuscus miR-196                      14      27
ssa-miR-196b-5p MIMAT0032458 Salmo salar miR-196b-5p                   14      27
ssa-miR-196a-5p MIMAT0032453 Salmo salar miR-196a-5p                   14      27
hhi-miR-196 MIMAT0030357 Hippoglossus hippoglossus miR-196             14      27
ipu-miR-196d MIMAT0029449 Ictalurus punctatus miR-196d                 14      27
ipu-miR-196a MIMAT0029448 Ictalurus punctatus miR-196a                 14      27
ghr-miR7507 MIMAT0029154 Gossypium hirsutum miR7507                    14      27
mdo-miR-196a-5p MIMAT0028494 Monodelphis domestica miR-196a-5p         14      27
ccr-miR-196b MIMAT0026254 Cyprinus carpio miR-196b                     14      27
ccr-miR-196a MIMAT0026253 Cyprinus carpio miR-196a                     14      27
mmu-miR-7076-3p MIMAT0028059 Mus musculus miR-7076-3p                  14      27
tgu-miR-196 MIMAT0025394 Taeniopygia guttata miR-196                   14      27
cgr-miR-196c MIMAT0023834 Cricetulus griseus miR-196c                  14      27
cgr-miR-196b MIMAT0023833 Cricetulus griseus miR-196b                  14      27
cgr-miR-196a-5p MIMAT0023831 Cricetulus griseus miR-196a-5p            14      27
ola-miR-196a MIMAT0022564 Oryzias latipes miR-196a                     14      27
aca-miR-196c-5p MIMAT0021832 Anolis carolinensis miR-196c-5p           14      27
aca-miR-196a MIMAT0021831 Anolis carolinensis miR-196a                 14      27
pma-miR-196b MIMAT0019504 Petromyzon marinus miR-196b                  14      27
pma-miR-196a-5p MIMAT0019502 Petromyzon marinus miR-196a-5p            14      27
mmu-miR-3962 MIMAT0019340 Mus musculus miR-3962                        14      27
vvi-miR3626-5p MIMAT0018015 Vitis vinifera miR3626-5p                  14      27
cin-miR-4090-3p MIMAT0016667 Ciona intestinalis miR-4090-3p            14      27
cin-miR-196-5p MIMAT0016413 Ciona intestinalis miR-196-5p              14      27
ppy-miR-196b MIMAT0015791 Pongo pygmaeus miR-196b                      14      27
ssc-miR-196b-5p MIMAT0013923 Sus scrofa miR-196b-5p                    14      27
eca-miR-196a MIMAT0013028 Equus caballus miR-196a                      14      27
eca-miR-196b MIMAT0012939 Equus caballus miR-196b                      14      27
cte-miR-2687 MIMAT0013539 Capitella teleta miR-2687                    14      27
bta-miR-2288 MIMAT0011795 Bos taurus miR-2288                          14      27
dre-miR-196d MIMAT0011313 Danio rerio miR-196d                         14      27
dre-miR-196c MIMAT0011298 Danio rerio miR-196c                         14      27
bta-miR-196b MIMAT0009256 Bos taurus miR-196b                          14      27
bta-miR-196a MIMAT0009255 Bos taurus miR-196a                          14      27
ptr-miR-196b MIMAT0008061 Pan troglodytes miR-196b                     14      27
cfa-miR-196a MIMAT0006662 Canis familiaris miR-196a                    14      27
cfa-miR-196b MIMAT0006620 Canis familiaris miR-196b                    14      27
mml-miR-196b-5p MIMAT0006229 Macaca mulatta miR-196b-5p                14      27
oan-miR-196b-5p MIMAT0007139 Ornithorhynchus anatinus miR-196b-5p      14      27
oan-miR-196a-5p MIMAT0006876 Ornithorhynchus anatinus miR-196a-5p      14      27
rno-miR-196c-5p MIMAT0005303 Rattus norvegicus miR-196c-5p             14      27
mdo-miR-196b MIMAT0004124 Monodelphis domestica miR-196b               14      27
xtr-miR-196b MIMAT0003691 Xenopus tropicalis miR-196b                  14      27
xtr-miR-196a MIMAT0003690 Xenopus tropicalis miR-196a                  14      27
tni-miR-196b MIMAT0003034 Tetraodon nigroviridis miR-196b              14      27
fru-miR-196b MIMAT0003033 Fugu rubripes miR-196b                       14      27
tni-miR-196a MIMAT0002956 Tetraodon nigroviridis miR-196a              14      27
fru-miR-196a MIMAT0002955 Fugu rubripes miR-196a                       14      27
ppa-miR-196 MIMAT0002526 Pan paniscus miR-196                          14      27
age-miR-196 MIMAT0002525 Ateles geoffroyi miR-196                      14      27
lla-miR-196 MIMAT0002524 Lagothrix lagotricha miR-196                  14      27
ppy-miR-196-2 MIMAT0002523 Pongo pygmaeus miR-196-2                    14      27
ptr-miR-196a MIMAT0002522 Pan troglodytes miR-196a                     14      27
ppy-miR-196 MIMAT0002521 Pongo pygmaeus miR-196                        14      27
ggo-miR-196 MIMAT0002520 Gorilla gorilla miR-196                       14      27
mml-miR-196a-5p MIMAT0002519 Macaca mulatta miR-196a-5p                14      27
ssc-miR-196a MIMAT0002163 Sus scrofa miR-196a                          14      27
dre-miR-196b MIMAT0001860 Danio rerio miR-196b                         14      27
dre-miR-196a-5p MIMAT0001276 Danio rerio miR-196a-5p                   14      27
gga-miR-196-5p MIMAT0001121 Gallus gallus miR-196-5p                   14      27
rno-miR-196b-5p MIMAT0001082 Rattus norvegicus miR-196b-5p             14      27
mmu-miR-196b-5p MIMAT0001081 Mus musculus miR-196b-5p                  14      27
hsa-miR-196b-5p MIMAT0001080 Homo sapiens miR-196b-5p                  14      27
rno-miR-196a-5p MIMAT0000871 Rattus norvegicus miR-196a-5p             14      27
mmu-miR-196a-5p MIMAT0000518 Mus musculus miR-196a-5p                  14      27
hsa-miR-196a-5p MIMAT0000226 Homo sapiens miR-196a-5p                  14      27
>kshv-miR-K12-5-5p MIMAT0015218 Kaposi sarcoma-associated
         miR-K12-5-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 aggtagtc 8
         ||||||||
Sbjct: 1 aggtagtc 8
>oha-miR-196c-5p MIMAT0036787 Ophiophagus hannah miR-196c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>oha-miR-196b-5p MIMAT0036785 Ophiophagus hannah miR-196b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>oha-miR-196a-5p MIMAT0036783 Ophiophagus hannah miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>tch-miR-196a-5p MIMAT0036623 Tupaia chinensis miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>chi-miR-196b MIMAT0036033 Capra hircus miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>chi-miR-196a MIMAT0036032 Capra hircus miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>efu-miR-196 MIMAT0035121 Eptesicus fuscus miR-196
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ssa-miR-196b-5p MIMAT0032458 Salmo salar miR-196b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ssa-miR-196a-5p MIMAT0032453 Salmo salar miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>hhi-miR-196 MIMAT0030357 Hippoglossus hippoglossus miR-196
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ipu-miR-196d MIMAT0029449 Ictalurus punctatus miR-196d
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ipu-miR-196a MIMAT0029448 Ictalurus punctatus miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ghr-miR7507 MIMAT0029154 Gossypium hirsutum miR7507
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>mdo-miR-196a-5p MIMAT0028494 Monodelphis domestica miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ccr-miR-196b MIMAT0026254 Cyprinus carpio miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ccr-miR-196a MIMAT0026253 Cyprinus carpio miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>mmu-miR-7076-3p MIMAT0028059 Mus musculus miR-7076-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ggtagtc 8
         |||||||
Sbjct: 8 ggtagtc 2
>tgu-miR-196 MIMAT0025394 Taeniopygia guttata miR-196
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>cgr-miR-196c MIMAT0023834 Cricetulus griseus miR-196c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>cgr-miR-196b MIMAT0023833 Cricetulus griseus miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>cgr-miR-196a-5p MIMAT0023831 Cricetulus griseus miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ola-miR-196a MIMAT0022564 Oryzias latipes miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>aca-miR-196c-5p MIMAT0021832 Anolis carolinensis miR-196c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>aca-miR-196a MIMAT0021831 Anolis carolinensis miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>pma-miR-196b MIMAT0019504 Petromyzon marinus miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>pma-miR-196a-5p MIMAT0019502 Petromyzon marinus miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>mmu-miR-3962 MIMAT0019340 Mus musculus miR-3962
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 1 aggtagt 7
>vvi-miR3626-5p MIMAT0018015 Vitis vinifera miR3626-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ggtagtc 8
         |||||||
Sbjct: 1 ggtagtc 7
>cin-miR-4090-3p MIMAT0016667 Ciona intestinalis miR-4090-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 1 aggtagt 7
>cin-miR-196-5p MIMAT0016413 Ciona intestinalis miR-196-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ppy-miR-196b MIMAT0015791 Pongo pygmaeus miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ssc-miR-196b-5p MIMAT0013923 Sus scrofa miR-196b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>eca-miR-196a MIMAT0013028 Equus caballus miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>eca-miR-196b MIMAT0012939 Equus caballus miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>cte-miR-2687 MIMAT0013539 Capitella teleta miR-2687
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>bta-miR-2288 MIMAT0011795 Bos taurus miR-2288
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 1 aggtagt 7
>dre-miR-196d MIMAT0011313 Danio rerio miR-196d
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>dre-miR-196c MIMAT0011298 Danio rerio miR-196c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>bta-miR-196b MIMAT0009256 Bos taurus miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>bta-miR-196a MIMAT0009255 Bos taurus miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ptr-miR-196b MIMAT0008061 Pan troglodytes miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>cfa-miR-196a MIMAT0006662 Canis familiaris miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>cfa-miR-196b MIMAT0006620 Canis familiaris miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>mml-miR-196b-5p MIMAT0006229 Macaca mulatta miR-196b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>oan-miR-196b-5p MIMAT0007139 Ornithorhynchus anatinus
         miR-196b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>oan-miR-196a-5p MIMAT0006876 Ornithorhynchus anatinus
         miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>rno-miR-196c-5p MIMAT0005303 Rattus norvegicus miR-196c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>mdo-miR-196b MIMAT0004124 Monodelphis domestica miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>xtr-miR-196b MIMAT0003691 Xenopus tropicalis miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>xtr-miR-196a MIMAT0003690 Xenopus tropicalis miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>tni-miR-196b MIMAT0003034 Tetraodon nigroviridis miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>fru-miR-196b MIMAT0003033 Fugu rubripes miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>tni-miR-196a MIMAT0002956 Tetraodon nigroviridis miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>fru-miR-196a MIMAT0002955 Fugu rubripes miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ppa-miR-196 MIMAT0002526 Pan paniscus miR-196
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>age-miR-196 MIMAT0002525 Ateles geoffroyi miR-196
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>lla-miR-196 MIMAT0002524 Lagothrix lagotricha miR-196
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ppy-miR-196-2 MIMAT0002523 Pongo pygmaeus miR-196-2
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ptr-miR-196a MIMAT0002522 Pan troglodytes miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ppy-miR-196 MIMAT0002521 Pongo pygmaeus miR-196
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ggo-miR-196 MIMAT0002520 Gorilla gorilla miR-196
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>mml-miR-196a-5p MIMAT0002519 Macaca mulatta miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>ssc-miR-196a MIMAT0002163 Sus scrofa miR-196a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>dre-miR-196b MIMAT0001860 Danio rerio miR-196b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>dre-miR-196a-5p MIMAT0001276 Danio rerio miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>gga-miR-196-5p MIMAT0001121 Gallus gallus miR-196-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>rno-miR-196b-5p MIMAT0001082 Rattus norvegicus miR-196b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>mmu-miR-196b-5p MIMAT0001081 Mus musculus miR-196b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>hsa-miR-196b-5p MIMAT0001080 Homo sapiens miR-196b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>rno-miR-196a-5p MIMAT0000871 Rattus norvegicus miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>mmu-miR-196a-5p MIMAT0000518 Mus musculus miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
>hsa-miR-196a-5p MIMAT0000226 Homo sapiens miR-196a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 aggtagt 7
         |||||||
Sbjct: 2 aggtagt 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 547
Number of extensions: 473
Number of successful extensions: 449
Number of sequences better than 100.0: 73
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 73
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)