BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-9*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
smo-miR1095b MIMAT0005251 Selaginella moellendorffii miR1095b 14 20
smo-miR1095a MIMAT0005250 Selaginella moellendorffii miR1095a 14 20
oha-miR-23b-5p MIMAT0036856 Ophiophagus hannah miR-23b-5p 12 80
oha-miR-23a-5p MIMAT0036854 Ophiophagus hannah miR-23a-5p 12 80
chi-miR-23b-5p MIMAT0036088 Capra hircus miR-23b-5p 12 80
esi-miR8622c MIMAT0033963 Ectocarpus siliculosus miR8622c 12 80
cel-miR-4810b-5p MIMAT0032821 Caenorhabditis elegans miR-4810b-5p 12 80
ssa-miR-23a-4-5p MIMAT0032550 Salmo salar miR-23a-4-5p 12 80
ssa-miR-196b-3p MIMAT0032459 Salmo salar miR-196b-3p 12 80
prd-miR-7947-3p MIMAT0030759 Panagrellus redivivus miR-7947-3p 12 80
mtr-miR7701-3p MIMAT0030016 Medicago truncatula miR7701-3p 12 80
mmu-miR-7010-3p MIMAT0027925 Mus musculus miR-7010-3p 12 80
rno-miR-6317 MIMAT0025054 Rattus norvegicus miR-6317 12 80
hme-miR-6306-5p MIMAT0025012 Heliconius melpomene miR-6306-5p 12 80
cgr-miR-23a-5p MIMAT0023862 Cricetulus griseus miR-23a-5p 12 80
cgr-miR-152-5p MIMAT0023784 Cricetulus griseus miR-152-5p 12 80
hsa-miR-6070 MIMAT0023695 Homo sapiens miR-6070 12 80
spu-miR-5994 MIMAT0023516 Strongylocentrotus purpuratus miR-5994 12 80
hco-miR-5951 MIMAT0023453 Haemonchus contortus miR-5951 12 80
osa-miR5810 MIMAT0023282 Oryza sativa miR5810 12 80
aca-miR-23a-5p MIMAT0021895 Anolis carolinensis miR-23a-5p 12 80
hsa-miR-642b-5p MIMAT0022736 Homo sapiens miR-642b-5p 12 80
hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914 12 80
pab-miR3710 MIMAT0018143 Picea abies miR3710 12 80
tgu-miR-23-5p MIMAT0014644 Taeniopygia guttata miR-23-5p 12 80
mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p 12 80
mml-miR-152-5p MIMAT0026829 Macaca mulatta miR-152-5p 12 80
gga-miR-1588 MIMAT0007450 Gallus gallus miR-1588 12 80
gga-miR-1572 MIMAT0007432 Gallus gallus miR-1572 12 80
oan-miR-23a-5p MIMAT0007060 Ornithorhynchus anatinus miR-23a-5p 12 80
oan-miR-23b-5p MIMAT0006958 Ornithorhynchus anatinus miR-23b-5p 12 80
cre-miR1144a.2 MIMAT0005379 Chlamydomonas reinhardtii miR1144a.2 12 80
rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5 12 80
mdo-miR-23a-5p MIMAT0026710 Monodelphis domestica miR-23a-5p 12 80
mdo-miR-152-5p MIMAT0026671 Monodelphis domestica miR-152-5p 12 80
mml-miR-23a-5p MIMAT0026599 Macaca mulatta miR-23a-5p 12 80
rno-miR-152-5p MIMAT0017134 Rattus norvegicus miR-152-5p 12 80
rno-miR-23a-5p MIMAT0004712 Rattus norvegicus miR-23a-5p 12 80
mmu-miR-23a-5p MIMAT0017019 Mus musculus miR-23a-5p 12 80
hsa-miR-152-5p MIMAT0026479 Homo sapiens miR-152-5p 12 80
hsa-miR-23b-5p MIMAT0004587 Homo sapiens miR-23b-5p 12 80
hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p 12 80
hsa-miR-23a-5p MIMAT0004496 Homo sapiens miR-23a-5p 12 80
>smo-miR1095b MIMAT0005251 Selaginella moellendorffii miR1095b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggttcc 7
|||||||
Sbjct: 2 aggttcc 8
>smo-miR1095a MIMAT0005250 Selaginella moellendorffii miR1095a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 aggttcc 7
|||||||
Sbjct: 2 aggttcc 8
>oha-miR-23b-5p MIMAT0036856 Ophiophagus hannah miR-23b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>oha-miR-23a-5p MIMAT0036854 Ophiophagus hannah miR-23a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>chi-miR-23b-5p MIMAT0036088 Capra hircus miR-23b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>esi-miR8622c MIMAT0033963 Ectocarpus siliculosus miR8622c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>cel-miR-4810b-5p MIMAT0032821 Caenorhabditis elegans
miR-4810b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggttc 6
||||||
Sbjct: 3 aggttc 8
>ssa-miR-23a-4-5p MIMAT0032550 Salmo salar miR-23a-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>ssa-miR-196b-3p MIMAT0032459 Salmo salar miR-196b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttcc 7
||||||
Sbjct: 8 ggttcc 3
>prd-miR-7947-3p MIMAT0030759 Panagrellus redivivus miR-7947-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggttc 6
||||||
Sbjct: 8 aggttc 3
>mtr-miR7701-3p MIMAT0030016 Medicago truncatula miR7701-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggttc 6
||||||
Sbjct: 3 aggttc 8
>mmu-miR-7010-3p MIMAT0027925 Mus musculus miR-7010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggttc 6
||||||
Sbjct: 1 aggttc 6
>rno-miR-6317 MIMAT0025054 Rattus norvegicus miR-6317
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggttc 6
||||||
Sbjct: 8 aggttc 3
>hme-miR-6306-5p MIMAT0025012 Heliconius melpomene miR-6306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggttc 6
||||||
Sbjct: 3 aggttc 8
>cgr-miR-23a-5p MIMAT0023862 Cricetulus griseus miR-23a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>cgr-miR-152-5p MIMAT0023784 Cricetulus griseus miR-152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggttc 6
||||||
Sbjct: 1 aggttc 6
>hsa-miR-6070 MIMAT0023695 Homo sapiens miR-6070
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>spu-miR-5994 MIMAT0023516 Strongylocentrotus purpuratus
miR-5994
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttcc 7
||||||
Sbjct: 7 ggttcc 2
>hco-miR-5951 MIMAT0023453 Haemonchus contortus miR-5951
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 1 ggttcc 6
>osa-miR5810 MIMAT0023282 Oryza sativa miR5810
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttcc 7
||||||
Sbjct: 8 ggttcc 3
>aca-miR-23a-5p MIMAT0021895 Anolis carolinensis miR-23a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>hsa-miR-642b-5p MIMAT0022736 Homo sapiens miR-642b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 1 ggttcc 6
>hsa-miR-3914 MIMAT0018188 Homo sapiens miR-3914
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttcc 7
||||||
Sbjct: 8 ggttcc 3
>pab-miR3710 MIMAT0018143 Picea abies miR3710
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttcc 7
||||||
Sbjct: 8 ggttcc 3
>tgu-miR-23-5p MIMAT0014644 Taeniopygia guttata miR-23-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>mml-miR-152-5p MIMAT0026829 Macaca mulatta miR-152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggttc 6
||||||
Sbjct: 1 aggttc 6
>gga-miR-1588 MIMAT0007450 Gallus gallus miR-1588
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttcc 7
||||||
Sbjct: 8 ggttcc 3
>gga-miR-1572 MIMAT0007432 Gallus gallus miR-1572
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 aggttc 6
||||||
Sbjct: 6 aggttc 1
>oan-miR-23a-5p MIMAT0007060 Ornithorhynchus anatinus miR-23a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>oan-miR-23b-5p MIMAT0006958 Ornithorhynchus anatinus miR-23b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>cre-miR1144a.2 MIMAT0005379 Chlamydomonas reinhardtii
miR1144a.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttcc 7
||||||
Sbjct: 7 ggttcc 2
>rrv-miR-rR1-5 MIMAT0004412 Rhesus monkey miR-rR1-5
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ggttcc 7
||||||
Sbjct: 8 ggttcc 3
>mdo-miR-23a-5p MIMAT0026710 Monodelphis domestica miR-23a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 1 ggttcc 6
>mdo-miR-152-5p MIMAT0026671 Monodelphis domestica miR-152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggttc 6
||||||
Sbjct: 1 aggttc 6
>mml-miR-23a-5p MIMAT0026599 Macaca mulatta miR-23a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 1 ggttcc 6
>rno-miR-152-5p MIMAT0017134 Rattus norvegicus miR-152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggttc 6
||||||
Sbjct: 1 aggttc 6
>rno-miR-23a-5p MIMAT0004712 Rattus norvegicus miR-23a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>mmu-miR-23a-5p MIMAT0017019 Mus musculus miR-23a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>hsa-miR-152-5p MIMAT0026479 Homo sapiens miR-152-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 aggttc 6
||||||
Sbjct: 1 aggttc 6
>hsa-miR-23b-5p MIMAT0004587 Homo sapiens miR-23b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
>hsa-miR-23a-5p MIMAT0004496 Homo sapiens miR-23a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ggttcc 7
||||||
Sbjct: 3 ggttcc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 65
Number of extensions: 63
Number of successful extensions: 43
Number of sequences better than 100.0: 43
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 43
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
