BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m22*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7091-3p MIMAT0028089 Mus musculus miR-7091-3p 16 6.9
mdv2-miR-M22-3p MIMAT0004466 Mareks disease miR-M22-3p 16 6.9
oha-miR-210-5p MIMAT0036826 Ophiophagus hannah miR-210-5p 14 27
efu-miR-210 MIMAT0035147 Eptesicus fuscus miR-210 14 27
ssa-miR-210-5p MIMAT0032508 Salmo salar miR-210-5p 14 27
sbi-miR6217b-5p MIMAT0026394 Sorghum bicolor miR6217b-5p 14 27
sbi-miR6217a-5p MIMAT0026392 Sorghum bicolor miR6217a-5p 14 27
cgr-miR-210-5p MIMAT0023848 Cricetulus griseus miR-210-5p 14 27
ola-miR-210-5p MIMAT0022660 Oryzias latipes miR-210-5p 14 27
osa-miR5521 MIMAT0022155 Oryza sativa miR5521 14 27
aca-miR-210-5p MIMAT0021867 Anolis carolinensis miR-210-5p 14 27
mdo-miR-210-5p MIMAT0026941 Monodelphis domestica miR-210-5p 14 27
dvi-miR-34-3p MIMAT0032078 Drosophila virilis miR-34-3p 14 27
bmo-miR-34-3p MIMAT0015228 Bombyx mori miR-34-3p 14 27
dre-miR-210-5p MIMAT0003392 Danio rerio miR-210-5p 14 27
rno-miR-210-5p MIMAT0017156 Rattus norvegicus miR-210-5p 14 27
mmu-miR-210-5p MIMAT0017052 Mus musculus miR-210-5p 14 27
dme-miR-34-3p MIMAT0020812 Drosophila melanogaster miR-34-3p 14 27
>mmu-miR-7091-3p MIMAT0028089 Mus musculus miR-7091-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agtggctt 8
||||||||
Sbjct: 1 agtggctt 8
>mdv2-miR-M22-3p MIMAT0004466 Mareks disease miR-M22-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 agtggctt 8
||||||||
Sbjct: 1 agtggctt 8
>oha-miR-210-5p MIMAT0036826 Ophiophagus hannah miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>efu-miR-210 MIMAT0035147 Eptesicus fuscus miR-210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>ssa-miR-210-5p MIMAT0032508 Salmo salar miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>sbi-miR6217b-5p MIMAT0026394 Sorghum bicolor miR6217b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 8 agtggct 2
>sbi-miR6217a-5p MIMAT0026392 Sorghum bicolor miR6217a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 8 agtggct 2
>cgr-miR-210-5p MIMAT0023848 Cricetulus griseus miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>ola-miR-210-5p MIMAT0022660 Oryzias latipes miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>osa-miR5521 MIMAT0022155 Oryza sativa miR5521
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtggct 7
|||||||
Sbjct: 1 agtggct 7
>aca-miR-210-5p MIMAT0021867 Anolis carolinensis miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>mdo-miR-210-5p MIMAT0026941 Monodelphis domestica miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>dvi-miR-34-3p MIMAT0032078 Drosophila virilis miR-34-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 8 agtggct 2
>bmo-miR-34-3p MIMAT0015228 Bombyx mori miR-34-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>dre-miR-210-5p MIMAT0003392 Danio rerio miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>rno-miR-210-5p MIMAT0017156 Rattus norvegicus miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>mmu-miR-210-5p MIMAT0017052 Mus musculus miR-210-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 7 agtggct 1
>dme-miR-34-3p MIMAT0020812 Drosophila melanogaster miR-34-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtggct 7
|||||||
Sbjct: 8 agtggct 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 205
Number of extensions: 185
Number of successful extensions: 154
Number of sequences better than 100.0: 18
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)