BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv2-miR-m22*
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-7091-3p MIMAT0028089 Mus musculus miR-7091-3p                  16   6.9  
mdv2-miR-M22-3p MIMAT0004466 Mareks disease miR-M22-3p                 16   6.9  
oha-miR-210-5p MIMAT0036826 Ophiophagus hannah miR-210-5p              14      27
efu-miR-210 MIMAT0035147 Eptesicus fuscus miR-210                      14      27
ssa-miR-210-5p MIMAT0032508 Salmo salar miR-210-5p                     14      27
sbi-miR6217b-5p MIMAT0026394 Sorghum bicolor miR6217b-5p               14      27
sbi-miR6217a-5p MIMAT0026392 Sorghum bicolor miR6217a-5p               14      27
cgr-miR-210-5p MIMAT0023848 Cricetulus griseus miR-210-5p              14      27
ola-miR-210-5p MIMAT0022660 Oryzias latipes miR-210-5p                 14      27
osa-miR5521 MIMAT0022155 Oryza sativa miR5521                          14      27
aca-miR-210-5p MIMAT0021867 Anolis carolinensis miR-210-5p             14      27
mdo-miR-210-5p MIMAT0026941 Monodelphis domestica miR-210-5p           14      27
dvi-miR-34-3p MIMAT0032078 Drosophila virilis miR-34-3p                14      27
bmo-miR-34-3p MIMAT0015228 Bombyx mori miR-34-3p                       14      27
dre-miR-210-5p MIMAT0003392 Danio rerio miR-210-5p                     14      27
rno-miR-210-5p MIMAT0017156 Rattus norvegicus miR-210-5p               14      27
mmu-miR-210-5p MIMAT0017052 Mus musculus miR-210-5p                    14      27
dme-miR-34-3p MIMAT0020812 Drosophila melanogaster miR-34-3p           14      27
>mmu-miR-7091-3p MIMAT0028089 Mus musculus miR-7091-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 agtggctt 8
         ||||||||
Sbjct: 1 agtggctt 8
>mdv2-miR-M22-3p MIMAT0004466 Mareks disease miR-M22-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 agtggctt 8
         ||||||||
Sbjct: 1 agtggctt 8
>oha-miR-210-5p MIMAT0036826 Ophiophagus hannah miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>efu-miR-210 MIMAT0035147 Eptesicus fuscus miR-210
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>ssa-miR-210-5p MIMAT0032508 Salmo salar miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>sbi-miR6217b-5p MIMAT0026394 Sorghum bicolor miR6217b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 8 agtggct 2
>sbi-miR6217a-5p MIMAT0026392 Sorghum bicolor miR6217a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 8 agtggct 2
>cgr-miR-210-5p MIMAT0023848 Cricetulus griseus miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>ola-miR-210-5p MIMAT0022660 Oryzias latipes miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>osa-miR5521 MIMAT0022155 Oryza sativa miR5521
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 1 agtggct 7
>aca-miR-210-5p MIMAT0021867 Anolis carolinensis miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>mdo-miR-210-5p MIMAT0026941 Monodelphis domestica miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>dvi-miR-34-3p MIMAT0032078 Drosophila virilis miR-34-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 8 agtggct 2
>bmo-miR-34-3p MIMAT0015228 Bombyx mori miR-34-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>dre-miR-210-5p MIMAT0003392 Danio rerio miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>rno-miR-210-5p MIMAT0017156 Rattus norvegicus miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>mmu-miR-210-5p MIMAT0017052 Mus musculus miR-210-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 7 agtggct 1
>dme-miR-34-3p MIMAT0020812 Drosophila melanogaster miR-34-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 agtggct 7
         |||||||
Sbjct: 8 agtggct 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 205
Number of extensions: 185
Number of successful extensions: 154
Number of sequences better than 100.0: 18
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)