BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-15-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p 14 20
chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p 14 20
prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus miR-5358b-5p 14 20
mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360 14 20
gma-miR5785 MIMAT0023191 Glycine max miR5785 14 20
rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592 14 20
ssc-miR-505 MIMAT0013961 Sus scrofa miR-505 14 20
oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus miR-1398-3p 14 20
mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p 14 20
kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated miR-K... 14 20
ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p 12 80
tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142 12 80
gma-miR9746i MIMAT0036383 Glycine max miR9746i 12 80
gma-miR9746h MIMAT0036373 Glycine max miR9746h 12 80
gma-miR9746g MIMAT0036372 Glycine max miR9746g 12 80
gma-miR9746f MIMAT0036371 Glycine max miR9746f 12 80
gma-miR9746e MIMAT0036370 Glycine max miR9746e 12 80
gma-miR9746d MIMAT0036369 Glycine max miR9746d 12 80
gma-miR9746c MIMAT0036368 Glycine max miR9746c 12 80
gma-miR9746b MIMAT0036367 Glycine max miR9746b 12 80
gma-miR9746a MIMAT0036366 Glycine max miR9746a 12 80
eca-miR-9158 MIMAT0034735 Equus caballus miR-9158 12 80
eca-miR-9004 MIMAT0034544 Equus caballus miR-9004 12 80
eca-miR-8948 MIMAT0034477 Equus caballus miR-8948 12 80
psj-miR8788b-3p MIMAT0034273 Phytophthora sojae miR8788b-3p 12 80
psj-miR8788a-3p MIMAT0034271 Phytophthora sojae miR8788a-3p 12 80
sma-miR-8410-3p MIMAT0033525 Schistosoma mansoni miR-8410-3p 12 80
ath-miR8182 MIMAT0032781 Arabidopsis thaliana miR8182 12 80
ssa-miR-142a-3p MIMAT0032362 Salmo salar miR-142a-3p 12 80
bbe-miR-124-5p MIMAT0031577 Branchiostoma belcheri miR-124-5p 12 80
prd-miR-7937-3p MIMAT0030733 Panagrellus redivivus miR-7937-3p 12 80
oar-miR-200a MIMAT0030042 Ovis aries miR-200a 12 80
ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142 12 80
gga-miR-7444-3p MIMAT0029043 Gallus gallus miR-7444-3p 12 80
mdo-miR-1545b-5p MIMAT0028750 Monodelphis domestica miR-1545b-5p 12 80
mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p 12 80
mdo-miR-199b-3-5p MIMAT0031066 Monodelphis domestica miR-199b-3-5p 12 80
mdo-miR-199b-2-5p MIMAT0031065 Monodelphis domestica miR-199b-2-5p 12 80
mmu-miR-7228-3p MIMAT0028425 Mus musculus miR-7228-3p 12 80
mml-miR-7168-3p MIMAT0028271 Macaca mulatta miR-7168-3p 12 80
ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p 12 80
hsa-miR-6757-3p MIMAT0027415 Homo sapiens miR-6757-3p 12 80
gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p 12 80
ggo-miR-505 MIMAT0024228 Gorilla gorilla miR-505 12 80
cgr-miR-505-3p MIMAT0023980 Cricetulus griseus miR-505-3p 12 80
cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p 12 80
hco-miR-5924a-5p MIMAT0023403 Haemonchus contortus miR-5924a-5p 12 80
ola-miR-200a MIMAT0022571 Oryzias latipes miR-200a 12 80
dme-miR-4973-3p MIMAT0020202 Drosophila melanogaster miR-4973-3p 12 80
sko-miR-4826-3p MIMAT0020033 Saccoglossus kowalevskii miR-4826-3p 12 80
hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659 12 80
bta-miR-3602 MIMAT0016937 Bos taurus miR-3602 12 80
cin-miR-4139-3p MIMAT0016737 Ciona intestinalis miR-4139-3p 12 80
cin-miR-4121-3p MIMAT0016713 Ciona intestinalis miR-4121-3p 12 80
cin-miR-4061-3p MIMAT0016611 Ciona intestinalis miR-4061-3p 12 80
rno-miR-3587 MIMAT0017883 Rattus norvegicus miR-3587 12 80
ppy-miR-653 MIMAT0016086 Pongo pygmaeus miR-653 12 80
ppy-miR-609 MIMAT0016050 Pongo pygmaeus miR-609 12 80
tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p 12 80
tgu-miR-338-5p MIMAT0017389 Taeniopygia guttata miR-338-5p 12 80
eca-miR-653 MIMAT0012947 Equus caballus miR-653 12 80
bmo-miR-2752 MIMAT0012632 Bombyx mori miR-2752 12 80
dsi-miR-975 MIMAT0012501 Drosophila simulans miR-975 12 80
cfa-miR-653 MIMAT0009924 Canis familiaris miR-653 12 80
cfa-miR-141 MIMAT0009876 Canis familiaris miR-141 12 80
sko-miR-124-5p MIMAT0009624 Saccoglossus kowalevskii miR-124-5p 12 80
bfl-miR-124-5p MIMAT0019146 Branchiostoma floridae miR-124-5p 12 80
bta-miR-653 MIMAT0009358 Bos taurus miR-653 12 80
tca-miR-124-5p MIMAT0019114 Tribolium castaneum miR-124-5p 12 80
ptr-miR-653 MIMAT0008303 Pan troglodytes miR-653 12 80
mml-miR-653-5p MIMAT0006494 Macaca mulatta miR-653-5p 12 80
gma-miR1519 MIMAT0007378 Glycine max miR1519 12 80
smo-miR1082b MIMAT0005233 Selaginella moellendorffii miR1082b 12 80
dme-miR-1007-5p MIMAT0020904 Drosophila melanogaster miR-1007-5p 12 80
dme-miR-975-5p MIMAT0005491 Drosophila melanogaster miR-975-5p 12 80
mmu-miR-653-5p MIMAT0004943 Mus musculus miR-653-5p 12 80
sme-miR-87a-5p MIMAT0012109 Schmidtea mediterranea miR-87a-5p 12 80
bta-miR-142-3p MIMAT0003791 Bos taurus miR-142-3p 12 80
rno-miR-505-3p MIMAT0003380 Rattus norvegicus miR-505-3p 12 80
hsa-miR-653-5p MIMAT0003328 Homo sapiens miR-653-5p 12 80
mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p 12 80
ppa-miR-141 MIMAT0002201 Pan paniscus miR-141 12 80
ppy-miR-141 MIMAT0002200 Pongo pygmaeus miR-141 12 80
ggo-miR-141 MIMAT0002198 Gorilla gorilla miR-141 12 80
mml-miR-141-3p MIMAT0002196 Macaca mulatta miR-141-3p 12 80
kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated miR-K12-10b 12 80
hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p 12 80
>ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgttg 7
|||||||
Sbjct: 1 agtgttg 7
>chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtgttg 7
|||||||
Sbjct: 8 agtgttg 2
>prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus
miR-5358b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgttg 7
|||||||
Sbjct: 2 agtgttg 8
>mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgttg 7
|||||||
Sbjct: 2 agtgttg 8
>gma-miR5785 MIMAT0023191 Glycine max miR5785
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgttg 7
|||||||
Sbjct: 2 agtgttg 8
>rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgttg 7
|||||||
Sbjct: 2 agtgttg 8
>ssc-miR-505 MIMAT0013961 Sus scrofa miR-505
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtgttg 7
|||||||
Sbjct: 8 agtgttg 2
>oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus
miR-1398-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgttg 7
|||||||
Sbjct: 1 agtgttg 7
>mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 agtgttg 7
|||||||
Sbjct: 7 agtgttg 1
>kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated
miR-K12-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 agtgttg 7
|||||||
Sbjct: 2 agtgttg 8
>ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>tch-miR-142 MIMAT0036470 Tupaia chinensis miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gma-miR9746i MIMAT0036383 Glycine max miR9746i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gma-miR9746h MIMAT0036373 Glycine max miR9746h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gma-miR9746g MIMAT0036372 Glycine max miR9746g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gma-miR9746f MIMAT0036371 Glycine max miR9746f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gma-miR9746e MIMAT0036370 Glycine max miR9746e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gma-miR9746d MIMAT0036369 Glycine max miR9746d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gma-miR9746c MIMAT0036368 Glycine max miR9746c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gma-miR9746b MIMAT0036367 Glycine max miR9746b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gma-miR9746a MIMAT0036366 Glycine max miR9746a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>eca-miR-9158 MIMAT0034735 Equus caballus miR-9158
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>eca-miR-9004 MIMAT0034544 Equus caballus miR-9004
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>eca-miR-8948 MIMAT0034477 Equus caballus miR-8948
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 3 gtgttg 8
>psj-miR8788b-3p MIMAT0034273 Phytophthora sojae miR8788b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>psj-miR8788a-3p MIMAT0034271 Phytophthora sojae miR8788a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>sma-miR-8410-3p MIMAT0033525 Schistosoma mansoni miR-8410-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>ath-miR8182 MIMAT0032781 Arabidopsis thaliana miR8182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 3 gtgttg 8
>ssa-miR-142a-3p MIMAT0032362 Salmo salar miR-142a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>bbe-miR-124-5p MIMAT0031577 Branchiostoma belcheri miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>prd-miR-7937-3p MIMAT0030733 Panagrellus redivivus miR-7937-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>oar-miR-200a MIMAT0030042 Ovis aries miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>ipu-miR-142 MIMAT0029419 Ictalurus punctatus miR-142
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>gga-miR-7444-3p MIMAT0029043 Gallus gallus miR-7444-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>mdo-miR-1545b-5p MIMAT0028750 Monodelphis domestica
miR-1545b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>mdo-miR-505-3p MIMAT0028663 Monodelphis domestica miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>mdo-miR-199b-3-5p MIMAT0031066 Monodelphis domestica
miR-199b-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>mdo-miR-199b-2-5p MIMAT0031065 Monodelphis domestica
miR-199b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>mmu-miR-7228-3p MIMAT0028425 Mus musculus miR-7228-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>mml-miR-7168-3p MIMAT0028271 Macaca mulatta miR-7168-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>ccr-miR-142-3p MIMAT0026223 Cyprinus carpio miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>hsa-miR-6757-3p MIMAT0027415 Homo sapiens miR-6757-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>gga-miR-6553-3p MIMAT0025614 Gallus gallus miR-6553-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>ggo-miR-505 MIMAT0024228 Gorilla gorilla miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>cgr-miR-505-3p MIMAT0023980 Cricetulus griseus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>cgr-miR-142-3p MIMAT0023771 Cricetulus griseus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>hco-miR-5924a-5p MIMAT0023403 Haemonchus contortus miR-5924a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 6 gtgttg 1
>ola-miR-200a MIMAT0022571 Oryzias latipes miR-200a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>dme-miR-4973-3p MIMAT0020202 Drosophila melanogaster
miR-4973-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>sko-miR-4826-3p MIMAT0020033 Saccoglossus kowalevskii
miR-4826-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>bta-miR-3602 MIMAT0016937 Bos taurus miR-3602
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>cin-miR-4139-3p MIMAT0016737 Ciona intestinalis miR-4139-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>cin-miR-4121-3p MIMAT0016713 Ciona intestinalis miR-4121-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>cin-miR-4061-3p MIMAT0016611 Ciona intestinalis miR-4061-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>rno-miR-3587 MIMAT0017883 Rattus norvegicus miR-3587
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>ppy-miR-653 MIMAT0016086 Pongo pygmaeus miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>ppy-miR-609 MIMAT0016050 Pongo pygmaeus miR-609
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>tgu-miR-142-3p MIMAT0026999 Taeniopygia guttata miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>tgu-miR-338-5p MIMAT0017389 Taeniopygia guttata miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>eca-miR-653 MIMAT0012947 Equus caballus miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>bmo-miR-2752 MIMAT0012632 Bombyx mori miR-2752
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>dsi-miR-975 MIMAT0012501 Drosophila simulans miR-975
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 8 agtgtt 3
>cfa-miR-653 MIMAT0009924 Canis familiaris miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>cfa-miR-141 MIMAT0009876 Canis familiaris miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>sko-miR-124-5p MIMAT0009624 Saccoglossus kowalevskii miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>bfl-miR-124-5p MIMAT0019146 Branchiostoma floridae miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>bta-miR-653 MIMAT0009358 Bos taurus miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>tca-miR-124-5p MIMAT0019114 Tribolium castaneum miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>ptr-miR-653 MIMAT0008303 Pan troglodytes miR-653
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>mml-miR-653-5p MIMAT0006494 Macaca mulatta miR-653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>gma-miR1519 MIMAT0007378 Glycine max miR1519
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>smo-miR1082b MIMAT0005233 Selaginella moellendorffii miR1082b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>dme-miR-1007-5p MIMAT0020904 Drosophila melanogaster
miR-1007-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 3 agtgtt 8
>dme-miR-975-5p MIMAT0005491 Drosophila melanogaster miR-975-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 8 agtgtt 3
>mmu-miR-653-5p MIMAT0004943 Mus musculus miR-653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>sme-miR-87a-5p MIMAT0012109 Schmidtea mediterranea miR-87a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>bta-miR-142-3p MIMAT0003791 Bos taurus miR-142-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 agtgtt 6
||||||
Sbjct: 1 agtgtt 6
>rno-miR-505-3p MIMAT0003380 Rattus norvegicus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 8 gtgttg 3
>hsa-miR-653-5p MIMAT0003328 Homo sapiens miR-653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 1 gtgttg 6
>mml-miR-21-3p MIMAT0026573 Macaca mulatta miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 6 gtgttg 1
>ppa-miR-141 MIMAT0002201 Pan paniscus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>ppy-miR-141 MIMAT0002200 Pongo pygmaeus miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>ggo-miR-141 MIMAT0002198 Gorilla gorilla miR-141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>mml-miR-141-3p MIMAT0002196 Macaca mulatta miR-141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 agtgtt 6
||||||
Sbjct: 6 agtgtt 1
>kshv-miR-K12-10b MIMAT0002180 Kaposi sarcoma-associated
miR-K12-10b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gtgttg 7
||||||
Sbjct: 3 gtgttg 8
>hsa-miR-21-3p MIMAT0004494 Homo sapiens miR-21-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gtgttg 7
||||||
Sbjct: 6 gtgttg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 170
Number of extensions: 160
Number of successful extensions: 87
Number of sequences better than 100.0: 87
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 87
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
