BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m4*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-218-2-3p MIMAT0036838 Ophiophagus hannah miR-218-2-3p 14 20
ssa-miR-15c-2-3p MIMAT0032400 Salmo salar miR-15c-2-3p 14 20
prd-miR-7907b-3p MIMAT0030673 Panagrellus redivivus miR-7907b-3p 14 20
mdo-miR-218-2-3p MIMAT0031111 Monodelphis domestica miR-218-2-3p 14 20
ssc-miR-218-3p MIMAT0017969 Sus scrofa miR-218-3p 14 20
aly-miR3445-5p.1 MIMAT0017724 Arabidopsis lyrata miR3445-5p.1 14 20
mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p 14 20
mdo-miR-218-1-3p MIMAT0026680 Monodelphis domestica miR-218-1-3p 14 20
mdv1-miR-M4-3p MIMAT0003925 Mareks disease miR-M4-3p 14 20
mml-miR-218-2-3p MIMAT0026589 Macaca mulatta miR-218-2-3p 14 20
osa-miR396e-3p MIMAT0015159 Oryza sativa miR396e-3p 14 20
gga-miR-218-3p MIMAT0026518 Gallus gallus miR-218-3p 14 20
rno-miR-218a-2-3p MIMAT0004740 Rattus norvegicus miR-218a-2-3p 14 20
mmu-miR-218-2-3p MIMAT0005444 Mus musculus miR-218-2-3p 14 20
hsa-miR-218-2-3p MIMAT0004566 Homo sapiens miR-218-2-3p 14 20
hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p 14 20
oha-miR-218-1-3p MIMAT0036837 Ophiophagus hannah miR-218-1-3p 12 80
oha-miR-203-5p MIMAT0036810 Ophiophagus hannah miR-203-5p 12 80
oha-miR-182-3p MIMAT0036765 Ophiophagus hannah miR-182-3p 12 80
chi-miR-380-5p MIMAT0036197 Capra hircus miR-380-5p 12 80
tae-miR9679-5p MIMAT0035808 Triticum aestivum miR9679-5p 12 80
efu-miR-181a MIMAT0035054 Eptesicus fuscus miR-181a 12 80
efu-miR-9223g MIMAT0034821 Eptesicus fuscus miR-9223g 12 80
eca-miR-9044 MIMAT0034587 Equus caballus miR-9044 12 80
eca-miR-8949 MIMAT0034478 Equus caballus miR-8949 12 80
esi-miR8622b MIMAT0033959 Ectocarpus siliculosus miR8622b 12 80
esi-miR8622a MIMAT0033957 Ectocarpus siliculosus miR8622a 12 80
ssa-miR-218-3p MIMAT0032525 Salmo salar miR-218-3p 12 80
ssa-miR-203b-5p MIMAT0032486 Salmo salar miR-203b-5p 12 80
ssa-miR-203a-2-5p MIMAT0032485 Salmo salar miR-203a-2-5p 12 80
ssa-miR-203a-5p MIMAT0032483 Salmo salar miR-203a-5p 12 80
ssa-miR-182-3p MIMAT0032428 Salmo salar miR-182-3p 12 80
bbe-miR-29b-5p MIMAT0031664 Branchiostoma belcheri miR-29b-5p 12 80
hsa-miR-8069 MIMAT0030996 Homo sapiens miR-8069 12 80
prd-miR-2-5p MIMAT0030558 Panagrellus redivivus miR-2-5p 12 80
ipu-miR-203b MIMAT0029458 Ictalurus punctatus miR-203b 12 80
ipu-miR-203a MIMAT0029457 Ictalurus punctatus miR-203a 12 80
mdo-miR-7392-3p MIMAT0028883 Monodelphis domestica miR-7392-3p 12 80
mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p 12 80
dre-miR-7146-5p MIMAT0028203 Danio rerio miR-7146-5p 12 80
ccr-miR-203b-5p MIMAT0026261 Cyprinus carpio miR-203b-5p 12 80
mmu-miR-7046-3p MIMAT0027997 Mus musculus miR-7046-3p 12 80
mmu-miR-7041-3p MIMAT0027987 Mus musculus miR-7041-3p 12 80
mmu-miR-6942-3p MIMAT0027785 Mus musculus miR-6942-3p 12 80
mmu-miR-6910-3p MIMAT0027721 Mus musculus miR-6910-3p 12 80
gga-miR-6576-5p MIMAT0025659 Gallus gallus miR-6576-5p 12 80
pol-miR-203-5p MIMAT0025442 Paralichthys olivaceus miR-203-5p 12 80
pol-miR-182-3p MIMAT0025439 Paralichthys olivaceus miR-182-3p 12 80
mmu-miR-6378 MIMAT0025124 Mus musculus miR-6378 12 80
ggo-miR-584 MIMAT0024127 Gorilla gorilla miR-584 12 80
bna-miR6033 MIMAT0023653 Brassica napus miR6033 12 80
aca-miR-203-5p MIMAT0021851 Anolis carolinensis miR-203-5p 12 80
aca-miR-182-3p MIMAT0021812 Anolis carolinensis miR-182-3p 12 80
rmi-miR-5327 MIMAT0021400 Rhipicephalus microplus miR-5327 12 80
mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279 12 80
bdi-miR166g-5p MIMAT0027079 Brachypodium distachyon miR166g-5p 12 80
pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p 12 80
pma-miR-203b-5p MIMAT0019513 Petromyzon marinus miR-203b-5p 12 80
pma-miR-203a-5p MIMAT0019511 Petromyzon marinus miR-203a-5p 12 80
oar-miR-380-5p MIMAT0019253 Ovis aries miR-380-5p 12 80
tca-miR-3824-3p MIMAT0018675 Tribolium castaneum miR-3824-3p 12 80
cin-miR-4110-5p MIMAT0016698 Ciona intestinalis miR-4110-5p 12 80
ppy-miR-584 MIMAT0016027 Pongo pygmaeus miR-584 12 80
ssc-miR-299 MIMAT0015712 Sus scrofa miR-299 12 80
bmo-miR-3334 MIMAT0015521 Bombyx mori miR-3334 12 80
tgu-miR-203-5p MIMAT0027022 Taeniopygia guttata miR-203-5p 12 80
bfl-miR-29b-5p MIMAT0019140 Branchiostoma floridae miR-29b-5p 12 80
dsi-miR-312-5p MIMAT0015282 Drosophila simulans miR-312-5p 12 80
ptr-miR-584 MIMAT0008257 Pan troglodytes miR-584 12 80
cel-miR-1820-3p MIMAT0020359 Caenorhabditis elegans miR-1820-3p 12 80
mml-miR-758-5p MIMAT0026909 Macaca mulatta miR-758-5p 12 80
mml-miR-584-5p MIMAT0006446 Macaca mulatta miR-584-5p 12 80
mml-miR-380-5p MIMAT0026866 Macaca mulatta miR-380-5p 12 80
cre-miR1173 MIMAT0005431 Chlamydomonas reinhardtii miR1173 12 80
rno-miR-380-5p MIMAT0005308 Rattus norvegicus miR-380-5p 12 80
ath-miR869.1 MIMAT0004320 Arabidopsis thaliana miR869.1 12 80
xtr-miR-182-3p MIMAT0003611 Xenopus tropicalis miR-182-3p 12 80
hsa-miR-659-3p MIMAT0003337 Homo sapiens miR-659-3p 12 80
hsa-miR-597-3p MIMAT0026619 Homo sapiens miR-597-3p 12 80
hsa-miR-584-5p MIMAT0003249 Homo sapiens miR-584-5p 12 80
tni-miR-182 MIMAT0003094 Tetraodon nigroviridis miR-182 12 80
fru-miR-182 MIMAT0003093 Fugu rubripes miR-182 12 80
mne-miR-140 MIMAT0002256 Macaca nemestrina miR-140 12 80
kshv-miR-K12-6-3p MIMAT0002189 Kaposi sarcoma-associated miR-K12... 12 80
dre-miR-203b-5p MIMAT0003407 Danio rerio miR-203b-5p 12 80
dre-miR-203a-5p MIMAT0031923 Danio rerio miR-203a-5p 12 80
dre-miR-182-3p MIMAT0001272 Danio rerio miR-182-3p 12 80
rno-miR-203a-5p MIMAT0017153 Rattus norvegicus miR-203a-5p 12 80
mmu-miR-380-5p MIMAT0000744 Mus musculus miR-380-5p 12 80
osa-miR166e-3p MIMAT0000639 Oryza sativa miR166e-3p 12 80
dme-miR-312-5p MIMAT0020838 Drosophila melanogaster miR-312-5p 12 80
hsa-miR-203a-5p MIMAT0031890 Homo sapiens miR-203a-5p 12 80
hsa-miR-182-3p MIMAT0000260 Homo sapiens miR-182-3p 12 80
hsa-miR-181c-3p MIMAT0004559 Homo sapiens miR-181c-3p 12 80
mmu-miR-203-5p MIMAT0004547 Mus musculus miR-203-5p 12 80
>oha-miR-218-2-3p MIMAT0036838 Ophiophagus hannah miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 1 atggttc 7
>ssa-miR-15c-2-3p MIMAT0032400 Salmo salar miR-15c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atggttc 7
|||||||
Sbjct: 8 atggttc 2
>prd-miR-7907b-3p MIMAT0030673 Panagrellus redivivus
miR-7907b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atggttc 7
|||||||
Sbjct: 8 atggttc 2
>mdo-miR-218-2-3p MIMAT0031111 Monodelphis domestica
miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 1 atggttc 7
>ssc-miR-218-3p MIMAT0017969 Sus scrofa miR-218-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 1 atggttc 7
>aly-miR3445-5p.1 MIMAT0017724 Arabidopsis lyrata miR3445-5p.1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atggttc 7
|||||||
Sbjct: 8 atggttc 2
>mml-miR-218-1-3p MIMAT0031080 Macaca mulatta miR-218-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 1 atggttc 7
>mdo-miR-218-1-3p MIMAT0026680 Monodelphis domestica
miR-218-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 1 atggttc 7
>mdv1-miR-M4-3p MIMAT0003925 Mareks disease miR-M4-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 2 atggttc 8
>mml-miR-218-2-3p MIMAT0026589 Macaca mulatta miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 1 atggttc 7
>osa-miR396e-3p MIMAT0015159 Oryza sativa miR396e-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 1 atggttc 7
>gga-miR-218-3p MIMAT0026518 Gallus gallus miR-218-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 2 atggttc 8
>rno-miR-218a-2-3p MIMAT0004740 Rattus norvegicus miR-218a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 2 atggttc 8
>mmu-miR-218-2-3p MIMAT0005444 Mus musculus miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 2 atggttc 8
>hsa-miR-218-2-3p MIMAT0004566 Homo sapiens miR-218-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 2 atggttc 8
>hsa-miR-218-1-3p MIMAT0004565 Homo sapiens miR-218-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggttc 7
|||||||
Sbjct: 1 atggttc 7
>oha-miR-218-1-3p MIMAT0036837 Ophiophagus hannah miR-218-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>oha-miR-203-5p MIMAT0036810 Ophiophagus hannah miR-203-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>oha-miR-182-3p MIMAT0036765 Ophiophagus hannah miR-182-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>chi-miR-380-5p MIMAT0036197 Capra hircus miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>tae-miR9679-5p MIMAT0035808 Triticum aestivum miR9679-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggttc 7
||||||
Sbjct: 8 tggttc 3
>efu-miR-181a MIMAT0035054 Eptesicus fuscus miR-181a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atggtt 6
||||||
Sbjct: 6 atggtt 1
>efu-miR-9223g MIMAT0034821 Eptesicus fuscus miR-9223g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>eca-miR-9044 MIMAT0034587 Equus caballus miR-9044
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>eca-miR-8949 MIMAT0034478 Equus caballus miR-8949
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggttc 7
||||||
Sbjct: 6 tggttc 1
>esi-miR8622b MIMAT0033959 Ectocarpus siliculosus miR8622b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>esi-miR8622a MIMAT0033957 Ectocarpus siliculosus miR8622a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>ssa-miR-218-3p MIMAT0032525 Salmo salar miR-218-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>ssa-miR-203b-5p MIMAT0032486 Salmo salar miR-203b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>ssa-miR-203a-2-5p MIMAT0032485 Salmo salar miR-203a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>ssa-miR-203a-5p MIMAT0032483 Salmo salar miR-203a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>ssa-miR-182-3p MIMAT0032428 Salmo salar miR-182-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>bbe-miR-29b-5p MIMAT0031664 Branchiostoma belcheri miR-29b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>hsa-miR-8069 MIMAT0030996 Homo sapiens miR-8069
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>prd-miR-2-5p MIMAT0030558 Panagrellus redivivus miR-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atggtt 6
||||||
Sbjct: 6 atggtt 1
>ipu-miR-203b MIMAT0029458 Ictalurus punctatus miR-203b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>ipu-miR-203a MIMAT0029457 Ictalurus punctatus miR-203a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>mdo-miR-7392-3p MIMAT0028883 Monodelphis domestica miR-7392-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atggtt 6
||||||
Sbjct: 8 atggtt 3
>mdo-miR-15c-3p MIMAT0028769 Monodelphis domestica miR-15c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atggtt 6
||||||
Sbjct: 8 atggtt 3
>dre-miR-7146-5p MIMAT0028203 Danio rerio miR-7146-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atggtt 6
||||||
Sbjct: 8 atggtt 3
>ccr-miR-203b-5p MIMAT0026261 Cyprinus carpio miR-203b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>mmu-miR-7046-3p MIMAT0027997 Mus musculus miR-7046-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggttc 7
||||||
Sbjct: 7 tggttc 2
>mmu-miR-7041-3p MIMAT0027987 Mus musculus miR-7041-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>mmu-miR-6942-3p MIMAT0027785 Mus musculus miR-6942-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>mmu-miR-6910-3p MIMAT0027721 Mus musculus miR-6910-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>gga-miR-6576-5p MIMAT0025659 Gallus gallus miR-6576-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>pol-miR-203-5p MIMAT0025442 Paralichthys olivaceus miR-203-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>pol-miR-182-3p MIMAT0025439 Paralichthys olivaceus miR-182-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>mmu-miR-6378 MIMAT0025124 Mus musculus miR-6378
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>ggo-miR-584 MIMAT0024127 Gorilla gorilla miR-584
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>bna-miR6033 MIMAT0023653 Brassica napus miR6033
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggttc 7
||||||
Sbjct: 7 tggttc 2
>aca-miR-203-5p MIMAT0021851 Anolis carolinensis miR-203-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>aca-miR-182-3p MIMAT0021812 Anolis carolinensis miR-182-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>rmi-miR-5327 MIMAT0021400 Rhipicephalus microplus miR-5327
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>mtr-miR5279 MIMAT0021318 Medicago truncatula miR5279
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggttc 7
||||||
Sbjct: 8 tggttc 3
>bdi-miR166g-5p MIMAT0027079 Brachypodium distachyon miR166g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>pma-miR-218a-3p MIMAT0019530 Petromyzon marinus miR-218a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>pma-miR-203b-5p MIMAT0019513 Petromyzon marinus miR-203b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>pma-miR-203a-5p MIMAT0019511 Petromyzon marinus miR-203a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>oar-miR-380-5p MIMAT0019253 Ovis aries miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>tca-miR-3824-3p MIMAT0018675 Tribolium castaneum miR-3824-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>cin-miR-4110-5p MIMAT0016698 Ciona intestinalis miR-4110-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atggtt 6
||||||
Sbjct: 6 atggtt 1
>ppy-miR-584 MIMAT0016027 Pongo pygmaeus miR-584
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>ssc-miR-299 MIMAT0015712 Sus scrofa miR-299
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>bmo-miR-3334 MIMAT0015521 Bombyx mori miR-3334
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggttc 7
||||||
Sbjct: 7 tggttc 2
>tgu-miR-203-5p MIMAT0027022 Taeniopygia guttata miR-203-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>bfl-miR-29b-5p MIMAT0019140 Branchiostoma floridae miR-29b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>dsi-miR-312-5p MIMAT0015282 Drosophila simulans miR-312-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>ptr-miR-584 MIMAT0008257 Pan troglodytes miR-584
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>cel-miR-1820-3p MIMAT0020359 Caenorhabditis elegans miR-1820-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atggtt 6
||||||
Sbjct: 6 atggtt 1
>mml-miR-758-5p MIMAT0026909 Macaca mulatta miR-758-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>mml-miR-584-5p MIMAT0006446 Macaca mulatta miR-584-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>mml-miR-380-5p MIMAT0026866 Macaca mulatta miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>cre-miR1173 MIMAT0005431 Chlamydomonas reinhardtii miR1173
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>rno-miR-380-5p MIMAT0005308 Rattus norvegicus miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>ath-miR869.1 MIMAT0004320 Arabidopsis thaliana miR869.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>xtr-miR-182-3p MIMAT0003611 Xenopus tropicalis miR-182-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>hsa-miR-659-3p MIMAT0003337 Homo sapiens miR-659-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>hsa-miR-597-3p MIMAT0026619 Homo sapiens miR-597-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>hsa-miR-584-5p MIMAT0003249 Homo sapiens miR-584-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>tni-miR-182 MIMAT0003094 Tetraodon nigroviridis miR-182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>fru-miR-182 MIMAT0003093 Fugu rubripes miR-182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>mne-miR-140 MIMAT0002256 Macaca nemestrina miR-140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>kshv-miR-K12-6-3p MIMAT0002189 Kaposi sarcoma-associated
miR-K12-6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 3 atggtt 8
>dre-miR-203b-5p MIMAT0003407 Danio rerio miR-203b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>dre-miR-203a-5p MIMAT0031923 Danio rerio miR-203a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>dre-miR-182-3p MIMAT0001272 Danio rerio miR-182-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>rno-miR-203a-5p MIMAT0017153 Rattus norvegicus miR-203a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>mmu-miR-380-5p MIMAT0000744 Mus musculus miR-380-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atggtt 6
||||||
Sbjct: 1 atggtt 6
>osa-miR166e-3p MIMAT0000639 Oryza sativa miR166e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggttc 7
||||||
Sbjct: 8 tggttc 3
>dme-miR-312-5p MIMAT0020838 Drosophila melanogaster miR-312-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>hsa-miR-203a-5p MIMAT0031890 Homo sapiens miR-203a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
>hsa-miR-182-3p MIMAT0000260 Homo sapiens miR-182-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 1 tggttc 6
>hsa-miR-181c-3p MIMAT0004559 Homo sapiens miR-181c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atggtt 6
||||||
Sbjct: 6 atggtt 1
>mmu-miR-203-5p MIMAT0004547 Mus musculus miR-203-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggttc 7
||||||
Sbjct: 3 tggttc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 127
Number of extensions: 111
Number of successful extensions: 95
Number of sequences better than 100.0: 95
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 95
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
