BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-13-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ssa-miR-20a-1-3p MIMAT0032503 Salmo salar miR-20a-1-3p                 14      20
ipu-miR-7572 MIMAT0029571 Ictalurus punctatus miR-7572                 14      20
mdo-miR-7258-3p MIMAT0028483 Monodelphis domestica miR-7258-3p         14      20
hco-miR-5921-5p MIMAT0023395 Haemonchus contortus miR-5921-5p          14      20
dps-miR-2553-3p MIMAT0012367 Drosophila pseudoobscura miR-2553-3p      14      20
gga-miR-1811 MIMAT0007729 Gallus gallus miR-1811                       14      20
oan-miR-106-3p MIMAT0006850 Ornithorhynchus anatinus miR-106-3p        14      20
mdo-miR-191-3p MIMAT0026696 Monodelphis domestica miR-191-3p           14      20
mml-miR-106a-3p MIMAT0026604 Macaca mulatta miR-106a-3p                14      20
dre-miR-20b-3p MIMAT0031939 Danio rerio miR-20b-3p                     14      20
hsa-miR-106a-3p MIMAT0004517 Homo sapiens miR-106a-3p                  14      20
ssc-miR-9808-3p MIMAT0037026 Sus scrofa miR-9808-3p                    12      80
tch-miR-1301 MIMAT0036598 Tupaia chinensis miR-1301                    12      80
ptr-miR-1283b MIMAT0036458 Pan troglodytes miR-1283b                   12      80
ptr-miR-518g-5p MIMAT0036454 Pan troglodytes miR-518g-5p               12      80
ggo-miR-1283 MIMAT0036431 Gorilla gorilla miR-1283                     12      80
chi-miR-106a-3p MIMAT0035907 Capra hircus miR-106a-3p                  12      80
tae-miR9664-3p MIMAT0035775 Triticum aestivum miR9664-3p               12      80
dme-miR-9374-5p MIMAT0035211 Drosophila melanogaster miR-9374-5p       12      80
eca-miR-9079 MIMAT0034624 Equus caballus miR-9079                      12      80
cfa-miR-1301 MIMAT0034337 Canis familiaris miR-1301                    12      80
ppc-miR-8334-5p MIMAT0033212 Pristionchus pacificus miR-8334-5p        12      80
prd-miR-7870-3p MIMAT0030485 Panagrellus redivivus miR-7870-3p         12      80
oar-miR-25 MIMAT0030050 Ovis aries miR-25                              12      80
lva-miR-4854-3p MIMAT0032237 Lytechinus variegatus miR-4854-3p         12      80
cbr-miR-7583c-5p MIMAT0029593 Caenorhabditis briggsae miR-7583c-5p     12      80
gga-miR-7469-5p MIMAT0029092 Gallus gallus miR-7469-5p                 12      80
gga-miR-6669-3p MIMAT0025771 Gallus gallus miR-6669-3p                 12      80
ggo-miR-1301 MIMAT0024158 Gorilla gorilla miR-1301                     12      80
cgr-miR-450b-5p MIMAT0023962 Cricetulus griseus miR-450b-5p            12      80
hco-miR-5909 MIMAT0023365 Haemonchus contortus miR-5909                12      80
osa-miR5791 MIMAT0023258 Oryza sativa miR5791                          12      80
sha-miR-130b MIMAT0022814 Sarcophilus harrisii miR-130b                12      80
ola-miR-187 MIMAT0022596 Oryzias latipes miR-187                       12      80
asu-miR-5362-3p MIMAT0021587 Ascaris suum miR-5362-3p                  12      80
mtr-miR5246 MIMAT0021242 Medicago truncatula miR5246                   12      80
hsa-miR-5047 MIMAT0020541 Homo sapiens miR-5047                        12      80
spu-miR-4854 MIMAT0020077 Strongylocentrotus purpuratus miR-4854       12      80
sko-miR-4818a MIMAT0020009 Saccoglossus kowalevskii miR-4818a          12      80
nlo-miR-92a MIMAT0018439 Nasonia longicornis miR-92a                   12      80
ngi-miR-92a MIMAT0018407 Nasonia giraulti miR-92a                      12      80
tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p           12      80
cin-miR-4096-3p MIMAT0016677 Ciona intestinalis miR-4096-3p            12      80
sja-miR-310 MIMAT0016271 Schistosoma japonicum miR-310                 12      80
ppy-miR-1301 MIMAT0016221 Pongo pygmaeus miR-1301                      12      80
ppy-miR-1283b MIMAT0016205 Pongo pygmaeus miR-1283b                    12      80
ppy-miR-527 MIMAT0015986 Pongo pygmaeus miR-527                        12      80
ppy-miR-518a-5p MIMAT0015951 Pongo pygmaeus miR-518a-5p                12      80
nvi-miR-92a MIMAT0015668 Nasonia vitripennis miR-92a                   12      80
bmo-miR-3402 MIMAT0015606 Bombyx mori miR-3402                         12      80
bmo-miR-3259 MIMAT0015443 Bombyx mori miR-3259                         12      80
cqu-miR-92 MIMAT0014399 Culex quinquefasciatus miR-92                  12      80
eca-miR-1301 MIMAT0013070 Equus caballus miR-1301                      12      80
cte-miR-2705 MIMAT0013571 Capitella teleta miR-2705                    12      80
hsa-miR-2276-3p MIMAT0011775 Homo sapiens miR-2276-3p                  12      80
bta-miR-1301 MIMAT0009958 Bos taurus miR-1301                          12      80
cte-miR-92c MIMAT0009522 Capitella teleta miR-92c                      12      80
bta-miR-367 MIMAT0009299 Bos taurus miR-367                            12      80
tca-miR-92b-3p MIMAT0008368 Tribolium castaneum miR-92b-3p             12      80
tca-miR-92a-3p MIMAT0008367 Tribolium castaneum miR-92a-3p             12      80
ptr-miR-527 MIMAT0008212 Pan troglodytes miR-527                       12      80
gga-miR-1702 MIMAT0007594 Gallus gallus miR-1702                       12      80
oan-miR-1421ab-2-3p MIMAT0007300 Ornithorhynchus anatinus miR-14...    12      80
oan-miR-1421ab-3p MIMAT0007252 Ornithorhynchus anatinus miR-1421...    12      80
oan-miR-1384 MIMAT0007136 Ornithorhynchus anatinus miR-1384            12      80
dme-miR-978-5p MIMAT0020875 Drosophila melanogaster miR-978-5p         12      80
ame-miR-92a MIMAT0004435 Apis mellifera miR-92a                        12      80
mdo-miR-367 MIMAT0004184 Monodelphis domestica miR-367                 12      80
bta-miR-363 MIMAT0003855 Bos taurus miR-363                            12      80
ppt-miR1215 MIMAT0003904 Physcomitrella patens miR1215                 12      80
mmu-miR-450b-5p MIMAT0003511 Mus musculus miR-450b-5p                  12      80
hsa-miR-1301-3p MIMAT0005797 Homo sapiens miR-1301-3p                  12      80
hsa-miR-527 MIMAT0002862 Homo sapiens miR-527                          12      80
hsa-miR-518a-5p MIMAT0005457 Homo sapiens miR-518a-5p                  12      80
dre-miR-196a-3p MIMAT0031983 Danio rerio miR-196a-3p                   12      80
>ssa-miR-20a-1-3p MIMAT0032503 Salmo salar miR-20a-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 8 attgcag 2
>ipu-miR-7572 MIMAT0029571 Ictalurus punctatus miR-7572
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 2 attgcag 8
>mdo-miR-7258-3p MIMAT0028483 Monodelphis domestica miR-7258-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 7 attgcag 1
>hco-miR-5921-5p MIMAT0023395 Haemonchus contortus miR-5921-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 7 attgcag 1
>dps-miR-2553-3p MIMAT0012367 Drosophila pseudoobscura
         miR-2553-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 2 attgcag 8
>gga-miR-1811 MIMAT0007729 Gallus gallus miR-1811
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 2 attgcag 8
>oan-miR-106-3p MIMAT0006850 Ornithorhynchus anatinus miR-106-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 8 attgcag 2
>mdo-miR-191-3p MIMAT0026696 Monodelphis domestica miR-191-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 8 attgcag 2
>mml-miR-106a-3p MIMAT0026604 Macaca mulatta miR-106a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 8 attgcag 2
>dre-miR-20b-3p MIMAT0031939 Danio rerio miR-20b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 8 attgcag 2
>hsa-miR-106a-3p MIMAT0004517 Homo sapiens miR-106a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 7 attgcag 1
>ssc-miR-9808-3p MIMAT0037026 Sus scrofa miR-9808-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 3 ttgcag 8
>tch-miR-1301 MIMAT0036598 Tupaia chinensis miR-1301
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>ptr-miR-1283b MIMAT0036458 Pan troglodytes miR-1283b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 6 ttgcag 1
>ptr-miR-518g-5p MIMAT0036454 Pan troglodytes miR-518g-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 6 ttgcag 1
>ggo-miR-1283 MIMAT0036431 Gorilla gorilla miR-1283
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 6 ttgcag 1
>chi-miR-106a-3p MIMAT0035907 Capra hircus miR-106a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 8 ttgcag 3
>tae-miR9664-3p MIMAT0035775 Triticum aestivum miR9664-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>dme-miR-9374-5p MIMAT0035211 Drosophila melanogaster
         miR-9374-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 8 attgca 3
>eca-miR-9079 MIMAT0034624 Equus caballus miR-9079
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 3 ttgcag 8
>cfa-miR-1301 MIMAT0034337 Canis familiaris miR-1301
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>ppc-miR-8334-5p MIMAT0033212 Pristionchus pacificus miR-8334-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 8 attgca 3
>prd-miR-7870-3p MIMAT0030485 Panagrellus redivivus miR-7870-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 8 attgca 3
>oar-miR-25 MIMAT0030050 Ovis aries miR-25
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>lva-miR-4854-3p MIMAT0032237 Lytechinus variegatus miR-4854-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 3 ttgcag 8
>cbr-miR-7583c-5p MIMAT0029593 Caenorhabditis briggsae
         miR-7583c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 8 ttgcag 3
>gga-miR-7469-5p MIMAT0029092 Gallus gallus miR-7469-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 8 attgca 3
>gga-miR-6669-3p MIMAT0025771 Gallus gallus miR-6669-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>ggo-miR-1301 MIMAT0024158 Gorilla gorilla miR-1301
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>cgr-miR-450b-5p MIMAT0023962 Cricetulus griseus miR-450b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 3 ttgcag 8
>hco-miR-5909 MIMAT0023365 Haemonchus contortus miR-5909
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 7 ttgcag 2
>osa-miR5791 MIMAT0023258 Oryza sativa miR5791
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>sha-miR-130b MIMAT0022814 Sarcophilus harrisii miR-130b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 8 attgca 3
>ola-miR-187 MIMAT0022596 Oryzias latipes miR-187
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 8 ttgcag 3
>asu-miR-5362-3p MIMAT0021587 Ascaris suum miR-5362-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>mtr-miR5246 MIMAT0021242 Medicago truncatula miR5246
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>hsa-miR-5047 MIMAT0020541 Homo sapiens miR-5047
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>spu-miR-4854 MIMAT0020077 Strongylocentrotus purpuratus
         miR-4854
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 3 ttgcag 8
>sko-miR-4818a MIMAT0020009 Saccoglossus kowalevskii miR-4818a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>nlo-miR-92a MIMAT0018439 Nasonia longicornis miR-92a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>ngi-miR-92a MIMAT0018407 Nasonia giraulti miR-92a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 8 ttgcag 3
>cin-miR-4096-3p MIMAT0016677 Ciona intestinalis miR-4096-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 6 attgca 1
>sja-miR-310 MIMAT0016271 Schistosoma japonicum miR-310
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 3 attgca 8
>ppy-miR-1301 MIMAT0016221 Pongo pygmaeus miR-1301
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>ppy-miR-1283b MIMAT0016205 Pongo pygmaeus miR-1283b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 7 ttgcag 2
>ppy-miR-527 MIMAT0015986 Pongo pygmaeus miR-527
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 6 ttgcag 1
>ppy-miR-518a-5p MIMAT0015951 Pongo pygmaeus miR-518a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 6 ttgcag 1
>nvi-miR-92a MIMAT0015668 Nasonia vitripennis miR-92a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>bmo-miR-3402 MIMAT0015606 Bombyx mori miR-3402
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 6 attgca 1
>bmo-miR-3259 MIMAT0015443 Bombyx mori miR-3259
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 6 attgca 1
>cqu-miR-92 MIMAT0014399 Culex quinquefasciatus miR-92
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>eca-miR-1301 MIMAT0013070 Equus caballus miR-1301
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>cte-miR-2705 MIMAT0013571 Capitella teleta miR-2705
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 7 ttgcag 2
>hsa-miR-2276-3p MIMAT0011775 Homo sapiens miR-2276-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 7 ttgcag 2
>bta-miR-1301 MIMAT0009958 Bos taurus miR-1301
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>cte-miR-92c MIMAT0009522 Capitella teleta miR-92c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>bta-miR-367 MIMAT0009299 Bos taurus miR-367
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 3 attgca 8
>tca-miR-92b-3p MIMAT0008368 Tribolium castaneum miR-92b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>tca-miR-92a-3p MIMAT0008367 Tribolium castaneum miR-92a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>ptr-miR-527 MIMAT0008212 Pan troglodytes miR-527
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 6 ttgcag 1
>gga-miR-1702 MIMAT0007594 Gallus gallus miR-1702
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>oan-miR-1421ab-2-3p MIMAT0007300 Ornithorhynchus anatinus
         miR-1421ab-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 6 attgca 1
>oan-miR-1421ab-3p MIMAT0007252 Ornithorhynchus anatinus
         miR-1421ab-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 6 attgca 1
>oan-miR-1384 MIMAT0007136 Ornithorhynchus anatinus miR-1384
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 6 attgca 1
>dme-miR-978-5p MIMAT0020875 Drosophila melanogaster miR-978-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attgca 6
         ||||||
Sbjct: 6 attgca 1
>ame-miR-92a MIMAT0004435 Apis mellifera miR-92a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>mdo-miR-367 MIMAT0004184 Monodelphis domestica miR-367
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 3 attgca 8
>bta-miR-363 MIMAT0003855 Bos taurus miR-363
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 1 attgca 6
>ppt-miR1215 MIMAT0003904 Physcomitrella patens miR1215
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attgca 6
         ||||||
Sbjct: 3 attgca 8
>mmu-miR-450b-5p MIMAT0003511 Mus musculus miR-450b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 3 ttgcag 8
>hsa-miR-1301-3p MIMAT0005797 Homo sapiens miR-1301-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 1 ttgcag 6
>hsa-miR-527 MIMAT0002862 Homo sapiens miR-527
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 6 ttgcag 1
>hsa-miR-518a-5p MIMAT0005457 Homo sapiens miR-518a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 6 ttgcag 1
>dre-miR-196a-3p MIMAT0031983 Danio rerio miR-196a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttgcag 7
         ||||||
Sbjct: 6 ttgcag 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 394
Number of extensions: 383
Number of successful extensions: 75
Number of sequences better than 100.0: 75
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 75
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)