BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart4*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ebv-miR-BART4-3p MIMAT0009204 Epstein Barr miR-BART4-3p 16 6.9
oha-miR-499-3p MIMAT0036939 Ophiophagus hannah miR-499-3p 14 27
gma-miR5670b MIMAT0036393 Glycine max miR5670b 14 27
dvi-miR-989-3p MIMAT0035603 Drosophila virilis miR-989-3p 14 27
efu-miR-9235a MIMAT0034844 Eptesicus fuscus miR-9235a 14 27
atr-miR8579 MIMAT0033863 Amborella trichopoda miR8579 14 27
ssa-miR-499b-3p MIMAT0032662 Salmo salar miR-499b-3p 14 27
ssa-miR-499a-3p MIMAT0032660 Salmo salar miR-499a-3p 14 27
cbn-miR-7629 MIMAT0029671 Caenorhabditis brenneri miR-7629 14 27
tgu-miR-499-3p MIMAT0027340 Taeniopygia guttata miR-499-3p 14 27
osa-miR5837.2 MIMAT0023313 Oryza sativa miR5837.2 14 27
mtr-miR5742 MIMAT0023120 Medicago truncatula miR5742 14 27
ola-miR-499 MIMAT0022548 Oryzias latipes miR-499 14 27
aca-miR-499-3p MIMAT0021981 Anolis carolinensis miR-499-3p 14 27
hsa-miR-499b-3p MIMAT0019898 Homo sapiens miR-499b-3p 14 27
tca-miR-989-3p MIMAT0018823 Tribolium castaneum miR-989-3p 14 27
ame-miR-989 MIMAT0018511 Apis mellifera miR-989 14 27
aly-miR4233 MIMAT0017922 Arabidopsis lyrata miR4233 14 27
ppy-miR-499-3p MIMAT0015921 Pongo pygmaeus miR-499-3p 14 27
bmo-miR-3354 MIMAT0015540 Bombyx mori miR-3354 14 27
mmu-miR-466o-5p MIMAT0014885 Mus musculus miR-466o-5p 14 27
cqu-miR-989 MIMAT0014389 Culex quinquefasciatus miR-989 14 27
aae-miR-989 MIMAT0014239 Aedes aegypti miR-989 14 27
ssc-miR-499-3p MIMAT0017373 Sus scrofa miR-499-3p 14 27
eca-miR-499-3p MIMAT0013109 Equus caballus miR-499-3p 14 27
mdo-miR-499-3p MIMAT0026943 Monodelphis domestica miR-499-3p 14 27
dsi-miR-989 MIMAT0012497 Drosophila simulans miR-989 14 27
dps-miR-2559-3p MIMAT0012381 Drosophila pseudoobscura miR-2559-3p 14 27
dps-miR-989 MIMAT0012218 Drosophila pseudoobscura miR-989 14 27
ptr-miR-499 MIMAT0008172 Pan troglodytes miR-499 14 27
mml-miR-499-3p MIMAT0006362 Macaca mulatta miR-499-3p 14 27
oan-miR-499-3p MIMAT0006950 Ornithorhynchus anatinus miR-499-3p 14 27
aga-miR-989 MIMAT0005529 Anopheles gambiae miR-989 14 27
rno-miR-466c-5p MIMAT0005279 Rattus norvegicus miR-466c-5p 14 27
dme-miR-989-3p MIMAT0005506 Drosophila melanogaster miR-989-3p 14 27
mmu-miR-466c-5p MIMAT0004877 Mus musculus miR-466c-5p 14 27
mmu-miR-466b-5p MIMAT0004875 Mus musculus miR-466b-5p 14 27
mdo-miR-383-3p MIMAT0026684 Monodelphis domestica miR-383-3p 14 27
dre-miR-499-3p MIMAT0032009 Danio rerio miR-499-3p 14 27
rno-miR-499-3p MIMAT0017227 Rattus norvegicus miR-499-3p 14 27
gga-miR-499-3p MIMAT0026634 Gallus gallus miR-499-3p 14 27
hsa-miR-499a-3p MIMAT0004772 Homo sapiens miR-499a-3p 14 27
>ebv-miR-BART4-3p MIMAT0009204 Epstein Barr miR-BART4-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cacatcac 8
||||||||
Sbjct: 1 cacatcac 8
>oha-miR-499-3p MIMAT0036939 Ophiophagus hannah miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>gma-miR5670b MIMAT0036393 Glycine max miR5670b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacatca 7
|||||||
Sbjct: 1 cacatca 7
>dvi-miR-989-3p MIMAT0035603 Drosophila virilis miR-989-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>efu-miR-9235a MIMAT0034844 Eptesicus fuscus miR-9235a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacatca 7
|||||||
Sbjct: 8 cacatca 2
>atr-miR8579 MIMAT0033863 Amborella trichopoda miR8579
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 7 acatcac 1
>ssa-miR-499b-3p MIMAT0032662 Salmo salar miR-499b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>ssa-miR-499a-3p MIMAT0032660 Salmo salar miR-499a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>cbn-miR-7629 MIMAT0029671 Caenorhabditis brenneri miR-7629
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>tgu-miR-499-3p MIMAT0027340 Taeniopygia guttata miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>osa-miR5837.2 MIMAT0023313 Oryza sativa miR5837.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>mtr-miR5742 MIMAT0023120 Medicago truncatula miR5742
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacatca 7
|||||||
Sbjct: 2 cacatca 8
>ola-miR-499 MIMAT0022548 Oryzias latipes miR-499
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>aca-miR-499-3p MIMAT0021981 Anolis carolinensis miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>hsa-miR-499b-3p MIMAT0019898 Homo sapiens miR-499b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>tca-miR-989-3p MIMAT0018823 Tribolium castaneum miR-989-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>ame-miR-989 MIMAT0018511 Apis mellifera miR-989
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>aly-miR4233 MIMAT0017922 Arabidopsis lyrata miR4233
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacatca 7
|||||||
Sbjct: 1 cacatca 7
>ppy-miR-499-3p MIMAT0015921 Pongo pygmaeus miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>bmo-miR-3354 MIMAT0015540 Bombyx mori miR-3354
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacatca 7
|||||||
Sbjct: 2 cacatca 8
>mmu-miR-466o-5p MIMAT0014885 Mus musculus miR-466o-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacatca 7
|||||||
Sbjct: 7 cacatca 1
>cqu-miR-989 MIMAT0014389 Culex quinquefasciatus miR-989
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>aae-miR-989 MIMAT0014239 Aedes aegypti miR-989
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>ssc-miR-499-3p MIMAT0017373 Sus scrofa miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>eca-miR-499-3p MIMAT0013109 Equus caballus miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>mdo-miR-499-3p MIMAT0026943 Monodelphis domestica miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 1 acatcac 7
>dsi-miR-989 MIMAT0012497 Drosophila simulans miR-989
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>dps-miR-2559-3p MIMAT0012381 Drosophila pseudoobscura
miR-2559-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacatca 7
|||||||
Sbjct: 2 cacatca 8
>dps-miR-989 MIMAT0012218 Drosophila pseudoobscura miR-989
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>ptr-miR-499 MIMAT0008172 Pan troglodytes miR-499
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>mml-miR-499-3p MIMAT0006362 Macaca mulatta miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>oan-miR-499-3p MIMAT0006950 Ornithorhynchus anatinus miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>aga-miR-989 MIMAT0005529 Anopheles gambiae miR-989
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>rno-miR-466c-5p MIMAT0005279 Rattus norvegicus miR-466c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>dme-miR-989-3p MIMAT0005506 Drosophila melanogaster miR-989-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 acatcac 8
|||||||
Sbjct: 8 acatcac 2
>mmu-miR-466c-5p MIMAT0004877 Mus musculus miR-466c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacatca 7
|||||||
Sbjct: 7 cacatca 1
>mmu-miR-466b-5p MIMAT0004875 Mus musculus miR-466b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacatca 7
|||||||
Sbjct: 7 cacatca 1
>mdo-miR-383-3p MIMAT0026684 Monodelphis domestica miR-383-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cacatca 7
|||||||
Sbjct: 2 cacatca 8
>dre-miR-499-3p MIMAT0032009 Danio rerio miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>rno-miR-499-3p MIMAT0017227 Rattus norvegicus miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>gga-miR-499-3p MIMAT0026634 Gallus gallus miR-499-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
>hsa-miR-499a-3p MIMAT0004772 Homo sapiens miR-499a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 acatcac 8
|||||||
Sbjct: 2 acatcac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 205
Number of extensions: 162
Number of successful extensions: 137
Number of sequences better than 100.0: 42
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 42
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
