BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-ul22a*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978 14 20
gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p 14 20
mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228 14 20
ame-miR-3789 MIMAT0018568 Apis mellifera miR-3789 14 20
ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2 14 20
hcmv-miR-UL22A-3p MIMAT0001575 Human cytomegalovirus miR-UL22A-3p 14 20
oha-miR-138-5p MIMAT0036710 Ophiophagus hannah miR-138-5p 12 80
efu-miR-138a MIMAT0035063 Eptesicus fuscus miR-138a 12 80
efu-miR-138b MIMAT0035034 Eptesicus fuscus miR-138b 12 80
efu-miR-9292 MIMAT0034952 Eptesicus fuscus miR-9292 12 80
eca-miR-1911 MIMAT0034704 Equus caballus miR-1911 12 80
eca-miR-9128 MIMAT0034679 Equus caballus miR-9128 12 80
eca-miR-8989 MIMAT0034526 Equus caballus miR-8989 12 80
ssa-miR-138-5p MIMAT0032352 Salmo salar miR-138-5p 12 80
bbe-miR-4868c-3p MIMAT0031694 Branchiostoma belcheri miR-4868c-3p 12 80
ipu-miR-138 MIMAT0029414 Ictalurus punctatus miR-138 12 80
mdo-miR-7368-3p MIMAT0028759 Monodelphis domestica miR-7368-3p 12 80
hsa-miR-7152-3p MIMAT0028215 Homo sapiens miR-7152-3p 12 80
ssc-miR-7136-5p MIMAT0028147 Sus scrofa miR-7136-5p 12 80
ccr-miR-138 MIMAT0026218 Cyprinus carpio miR-138 12 80
hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p 12 80
hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p 12 80
hsa-miR-6753-5p MIMAT0027406 Homo sapiens miR-6753-5p 12 80
gga-miR-6702-5p MIMAT0025812 Gallus gallus miR-6702-5p 12 80
ssc-miR-138 MIMAT0025363 Sus scrofa miR-138 12 80
pde-miR950 MIMAT0025342 Pinus densata miR950 12 80
ptc-miR6466-5p MIMAT0025194 Populus trichocarpa miR6466-5p 12 80
ppe-miR6270 MIMAT0027295 Prunus persica miR6270 12 80
ppy-miR-4774 MIMAT0024382 Pongo pygmaeus miR-4774 12 80
ggo-miR-138 MIMAT0024098 Gorilla gorilla miR-138 12 80
cgr-miR-138 MIMAT0023764 Cricetulus griseus miR-138 12 80
sha-miR-138 MIMAT0022771 Sarcophilus harrisii miR-138 12 80
ola-miR-138 MIMAT0022554 Oryzias latipes miR-138 12 80
aca-miR-138-5p MIMAT0021757 Anolis carolinensis miR-138-5p 12 80
bdi-miR166g-5p MIMAT0027079 Brachypodium distachyon miR166g-5p 12 80
osa-miR5154 MIMAT0021104 Oryza sativa miR5154 12 80
bfl-miR-4868c-5p MIMAT0020106 Branchiostoma floridae miR-4868c-5p 12 80
hsa-miR-4774-5p MIMAT0019929 Homo sapiens miR-4774-5p 12 80
pma-miR-138b MIMAT0019470 Petromyzon marinus miR-138b 12 80
pma-miR-138a MIMAT0019469 Petromyzon marinus miR-138a 12 80
hsa-miR-4490 MIMAT0019025 Homo sapiens miR-4490 12 80
tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p 12 80
cin-miR-4140-3p MIMAT0016739 Ciona intestinalis miR-4140-3p 12 80
cin-miR-4113-5p MIMAT0016703 Ciona intestinalis miR-4113-5p 12 80
cin-miR-4040-3p MIMAT0016570 Ciona intestinalis miR-4040-3p 12 80
ppy-miR-138 MIMAT0015760 Pongo pygmaeus miR-138 12 80
bmo-miR-3357 MIMAT0015543 Bombyx mori miR-3357 12 80
api-miR-3045b MIMAT0014796 Acyrthosiphon pisum miR-3045b 12 80
tgu-miR-138-5p MIMAT0014515 Taeniopygia guttata miR-138-5p 12 80
tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958 12 80
eca-miR-1905b MIMAT0012957 Equus caballus miR-1905b 12 80
eca-miR-138 MIMAT0012925 Equus caballus miR-138 12 80
bmo-miR-2754 MIMAT0013614 Bombyx mori miR-2754 12 80
mmu-miR-1934-5p MIMAT0009398 Mus musculus miR-1934-5p 12 80
ptr-miR-138 MIMAT0008034 Pan troglodytes miR-138 12 80
hsa-miR-1911-3p MIMAT0007886 Homo sapiens miR-1911-3p 12 80
mmu-miR-1905 MIMAT0007866 Mus musculus miR-1905 12 80
cfa-miR-138a MIMAT0006654 Canis familiaris miR-138a 12 80
cfa-miR-138b MIMAT0006646 Canis familiaris miR-138b 12 80
mml-miR-138-5p MIMAT0006194 Macaca mulatta miR-138-5p 12 80
oan-miR-138-5p MIMAT0007216 Ornithorhynchus anatinus miR-138-5p 12 80
ppt-miR1024b MIMAT0005110 Physcomitrella patens miR1024b 12 80
ppt-miR1024a MIMAT0005109 Physcomitrella patens miR1024a 12 80
mdo-miR-138 MIMAT0004111 Monodelphis domestica miR-138 12 80
bta-miR-138 MIMAT0003813 Bos taurus miR-138 12 80
xtr-miR-138 MIMAT0003599 Xenopus tropicalis miR-138 12 80
mmu-miR-344d-2-5p MIMAT0014961 Mus musculus miR-344d-2-5p 12 80
rlcv-miR-rL1-12-5p MIMAT0003441 Rhesus lymphocryptovirus miR-rL1... 12 80
tni-miR-138 MIMAT0003080 Tetraodon nigroviridis miR-138 12 80
fru-miR-138 MIMAT0003079 Fugu rubripes miR-138 12 80
dre-miR-138-5p MIMAT0001835 Danio rerio miR-138-5p 12 80
gga-miR-138-5p MIMAT0001122 Gallus gallus miR-138-5p 12 80
rno-miR-138-5p MIMAT0000844 Rattus norvegicus miR-138-5p 12 80
hsa-miR-138-5p MIMAT0000430 Homo sapiens miR-138-5p 12 80
mmu-miR-138-5p MIMAT0000150 Mus musculus miR-138-5p 12 80
>hsa-miR-7978 MIMAT0031181 Homo sapiens miR-7978
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caccaga 7
|||||||
Sbjct: 7 caccaga 1
>gga-miR-6646-3p MIMAT0025743 Gallus gallus miR-6646-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caccaga 7
|||||||
Sbjct: 7 caccaga 1
>mtr-miR5228 MIMAT0021212 Medicago truncatula miR5228
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caccaga 7
|||||||
Sbjct: 7 caccaga 1
>ame-miR-3789 MIMAT0018568 Apis mellifera miR-3789
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caccaga 7
|||||||
Sbjct: 8 caccaga 2
>ath-miR869.2 MIMAT0004321 Arabidopsis thaliana miR869.2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caccaga 7
|||||||
Sbjct: 7 caccaga 1
>hcmv-miR-UL22A-3p MIMAT0001575 Human cytomegalovirus
miR-UL22A-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caccaga 7
|||||||
Sbjct: 2 caccaga 8
>oha-miR-138-5p MIMAT0036710 Ophiophagus hannah miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>efu-miR-138a MIMAT0035063 Eptesicus fuscus miR-138a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>efu-miR-138b MIMAT0035034 Eptesicus fuscus miR-138b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>efu-miR-9292 MIMAT0034952 Eptesicus fuscus miR-9292
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccag 6
||||||
Sbjct: 3 caccag 8
>eca-miR-1911 MIMAT0034704 Equus caballus miR-1911
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccag 6
||||||
Sbjct: 1 caccag 6
>eca-miR-9128 MIMAT0034679 Equus caballus miR-9128
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 6 caccag 1
>eca-miR-8989 MIMAT0034526 Equus caballus miR-8989
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 6 caccag 1
>ssa-miR-138-5p MIMAT0032352 Salmo salar miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>bbe-miR-4868c-3p MIMAT0031694 Branchiostoma belcheri
miR-4868c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 6 caccag 1
>ipu-miR-138 MIMAT0029414 Ictalurus punctatus miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>mdo-miR-7368-3p MIMAT0028759 Monodelphis domestica miR-7368-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccag 6
||||||
Sbjct: 1 caccag 6
>hsa-miR-7152-3p MIMAT0028215 Homo sapiens miR-7152-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>ssc-miR-7136-5p MIMAT0028147 Sus scrofa miR-7136-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>ccr-miR-138 MIMAT0026218 Cyprinus carpio miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 8 accaga 3
>hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 8 accaga 3
>hsa-miR-6753-5p MIMAT0027406 Homo sapiens miR-6753-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccag 6
||||||
Sbjct: 1 caccag 6
>gga-miR-6702-5p MIMAT0025812 Gallus gallus miR-6702-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccag 6
||||||
Sbjct: 1 caccag 6
>ssc-miR-138 MIMAT0025363 Sus scrofa miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>pde-miR950 MIMAT0025342 Pinus densata miR950
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>ptc-miR6466-5p MIMAT0025194 Populus trichocarpa miR6466-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>ppe-miR6270 MIMAT0027295 Prunus persica miR6270
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 7 accaga 2
>ppy-miR-4774 MIMAT0024382 Pongo pygmaeus miR-4774
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>ggo-miR-138 MIMAT0024098 Gorilla gorilla miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>cgr-miR-138 MIMAT0023764 Cricetulus griseus miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>sha-miR-138 MIMAT0022771 Sarcophilus harrisii miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>ola-miR-138 MIMAT0022554 Oryzias latipes miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>aca-miR-138-5p MIMAT0021757 Anolis carolinensis miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>bdi-miR166g-5p MIMAT0027079 Brachypodium distachyon miR166g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>osa-miR5154 MIMAT0021104 Oryza sativa miR5154
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccag 6
||||||
Sbjct: 3 caccag 8
>bfl-miR-4868c-5p MIMAT0020106 Branchiostoma floridae
miR-4868c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 6 caccag 1
>hsa-miR-4774-5p MIMAT0019929 Homo sapiens miR-4774-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>pma-miR-138b MIMAT0019470 Petromyzon marinus miR-138b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>pma-miR-138a MIMAT0019469 Petromyzon marinus miR-138a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>hsa-miR-4490 MIMAT0019025 Homo sapiens miR-4490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 8 accaga 3
>cin-miR-4140-3p MIMAT0016739 Ciona intestinalis miR-4140-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accaga 7
||||||
Sbjct: 1 accaga 6
>cin-miR-4113-5p MIMAT0016703 Ciona intestinalis miR-4113-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>cin-miR-4040-3p MIMAT0016570 Ciona intestinalis miR-4040-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accaga 7
||||||
Sbjct: 3 accaga 8
>ppy-miR-138 MIMAT0015760 Pongo pygmaeus miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>bmo-miR-3357 MIMAT0015543 Bombyx mori miR-3357
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>api-miR-3045b MIMAT0014796 Acyrthosiphon pisum miR-3045b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>tgu-miR-138-5p MIMAT0014515 Taeniopygia guttata miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>eca-miR-1905b MIMAT0012957 Equus caballus miR-1905b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccag 6
||||||
Sbjct: 1 caccag 6
>eca-miR-138 MIMAT0012925 Equus caballus miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>bmo-miR-2754 MIMAT0013614 Bombyx mori miR-2754
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>mmu-miR-1934-5p MIMAT0009398 Mus musculus miR-1934-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>ptr-miR-138 MIMAT0008034 Pan troglodytes miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>hsa-miR-1911-3p MIMAT0007886 Homo sapiens miR-1911-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccag 6
||||||
Sbjct: 1 caccag 6
>mmu-miR-1905 MIMAT0007866 Mus musculus miR-1905
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caccag 6
||||||
Sbjct: 1 caccag 6
>cfa-miR-138a MIMAT0006654 Canis familiaris miR-138a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>cfa-miR-138b MIMAT0006646 Canis familiaris miR-138b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>mml-miR-138-5p MIMAT0006194 Macaca mulatta miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>oan-miR-138-5p MIMAT0007216 Ornithorhynchus anatinus miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>ppt-miR1024b MIMAT0005110 Physcomitrella patens miR1024b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>ppt-miR1024a MIMAT0005109 Physcomitrella patens miR1024a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 6 accaga 1
>mdo-miR-138 MIMAT0004111 Monodelphis domestica miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>bta-miR-138 MIMAT0003813 Bos taurus miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>xtr-miR-138 MIMAT0003599 Xenopus tropicalis miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>mmu-miR-344d-2-5p MIMAT0014961 Mus musculus miR-344d-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 accaga 7
||||||
Sbjct: 8 accaga 3
>rlcv-miR-rL1-12-5p MIMAT0003441 Rhesus lymphocryptovirus
miR-rL1-12-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 accaga 7
||||||
Sbjct: 3 accaga 8
>tni-miR-138 MIMAT0003080 Tetraodon nigroviridis miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>fru-miR-138 MIMAT0003079 Fugu rubripes miR-138
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>dre-miR-138-5p MIMAT0001835 Danio rerio miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>gga-miR-138-5p MIMAT0001122 Gallus gallus miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>rno-miR-138-5p MIMAT0000844 Rattus norvegicus miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>hsa-miR-138-5p MIMAT0000430 Homo sapiens miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
>mmu-miR-138-5p MIMAT0000150 Mus musculus miR-138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caccag 6
||||||
Sbjct: 8 caccag 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 101
Number of extensions: 95
Number of successful extensions: 75
Number of sequences better than 100.0: 75
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 75
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
