BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h6*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv2-miR-H6-3p MIMAT0015652 Herpes Simplex miR-H6-3p 16 6.9
str-miR-8371-5p MIMAT0033366 Strongyloides ratti miR-8371-5p 14 27
stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035 14 27
ptc-miR7821 MIMAT0030402 Populus trichocarpa miR7821 14 27
ppe-miR482d-5p MIMAT0031174 Prunus persica miR482d-5p 14 27
hbr-miR482a MIMAT0024787 Hevea brasiliensis miR482a 14 27
cin-miR-5605-5p MIMAT0022337 Ciona intestinalis miR-5605-5p 14 27
hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b 14 27
hsa-miR-4647 MIMAT0019709 Homo sapiens miR-4647 14 27
hsa-miR-4426 MIMAT0018941 Homo sapiens miR-4426 14 27
aly-miR844-3p MIMAT0017630 Arabidopsis lyrata miR844-3p 14 27
mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969 14 27
rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p 14 27
>hsv2-miR-H6-3p MIMAT0015652 Herpes Simplex miR-H6-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cccatctt 8
||||||||
Sbjct: 1 cccatctt 8
>str-miR-8371-5p MIMAT0033366 Strongyloides ratti miR-8371-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccatct 7
|||||||
Sbjct: 7 cccatct 1
>stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccatctt 8
|||||||
Sbjct: 2 ccatctt 8
>ptc-miR7821 MIMAT0030402 Populus trichocarpa miR7821
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccatct 7
|||||||
Sbjct: 7 cccatct 1
>ppe-miR482d-5p MIMAT0031174 Prunus persica miR482d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccatct 7
|||||||
Sbjct: 8 cccatct 2
>hbr-miR482a MIMAT0024787 Hevea brasiliensis miR482a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cccatct 7
|||||||
Sbjct: 7 cccatct 1
>cin-miR-5605-5p MIMAT0022337 Ciona intestinalis miR-5605-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cccatct 7
|||||||
Sbjct: 2 cccatct 8
>hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccatctt 8
|||||||
Sbjct: 8 ccatctt 2
>hsa-miR-4647 MIMAT0019709 Homo sapiens miR-4647
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccatctt 8
|||||||
Sbjct: 8 ccatctt 2
>hsa-miR-4426 MIMAT0018941 Homo sapiens miR-4426
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccatctt 8
|||||||
Sbjct: 8 ccatctt 2
>aly-miR844-3p MIMAT0017630 Arabidopsis lyrata miR844-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccatctt 8
|||||||
Sbjct: 1 ccatctt 7
>mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ccatctt 8
|||||||
Sbjct: 7 ccatctt 1
>rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ccatctt 8
|||||||
Sbjct: 2 ccatctt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 145
Number of extensions: 131
Number of successful extensions: 108
Number of sequences better than 100.0: 13
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
