BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bfv-miR-bf1-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-345-3p MIMAT0036164 Capra hircus miR-345-3p 14 20
bfv-miR-BF1-3p MIMAT0035754 Bovine foamy miR-BF1-3p 14 20
aly-miR846-5p MIMAT0017635 Arabidopsis lyrata miR846-5p 14 20
ssc-miR-345-3p MIMAT0013900 Sus scrofa miR-345-3p 14 20
mtr-miR2654 MIMAT0013439 Medicago truncatula miR2654 14 20
cre-miR909.3 MIMAT0004392 Chlamydomonas reinhardtii miR909.3 14 20
hsa-miR-345-3p MIMAT0022698 Homo sapiens miR-345-3p 14 20
rno-miR-345-3p MIMAT0004655 Rattus norvegicus miR-345-3p 14 20
bdi-miR1432 MIMAT0035530 Brachypodium distachyon miR1432 12 80
eca-miR-8919 MIMAT0034447 Equus caballus miR-8919 12 80
eca-miR-8909 MIMAT0034437 Equus caballus miR-8909 12 80
ssa-miR-430a-5p MIMAT0032631 Salmo salar miR-430a-5p 12 80
hsa-miR-7976 MIMAT0031179 Homo sapiens miR-7976 12 80
mdo-miR-7332-3p MIMAT0028673 Monodelphis domestica miR-7332-3p 12 80
mml-miR-7199-3p MIMAT0028363 Macaca mulatta miR-7199-3p 12 80
mml-miR-7198-5p MIMAT0028360 Macaca mulatta miR-7198-5p 12 80
bma-miR-5872 MIMAT0026371 Brugia malayi miR-5872 12 80
hsa-miR-6823-5p MIMAT0027546 Homo sapiens miR-6823-5p 12 80
gga-miR-6665-5p MIMAT0025766 Gallus gallus miR-6665-5p 12 80
gga-miR-6634-5p MIMAT0025730 Gallus gallus miR-6634-5p 12 80
bta-miR-6517 MIMAT0025528 Bos taurus miR-6517 12 80
mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p 12 80
ggo-miR-1266 MIMAT0024268 Gorilla gorilla miR-1266 12 80
hco-miR-5957 MIMAT0023460 Haemonchus contortus miR-5957 12 80
asu-miR-83-5p MIMAT0021475 Ascaris suum miR-83-5p 12 80
hsa-miR-4518 MIMAT0019055 Homo sapiens miR-4518 12 80
tca-miR-3862-3p MIMAT0018801 Tribolium castaneum miR-3862-3p 12 80
vvi-miR3624-3p MIMAT0018012 Vitis vinifera miR3624-3p 12 80
hsa-miR-4270 MIMAT0016900 Homo sapiens miR-4270 12 80
hsa-miR-4324 MIMAT0016876 Homo sapiens miR-4324 12 80
ppy-miR-1297 MIMAT0016218 Pongo pygmaeus miR-1297 12 80
ppy-miR-1266 MIMAT0016190 Pongo pygmaeus miR-1266 12 80
bmo-miR-3387-3p MIMAT0015586 Bombyx mori miR-3387-3p 12 80
eca-miR-345-3p MIMAT0013139 Equus caballus miR-345-3p 12 80
eca-miR-670 MIMAT0013052 Equus caballus miR-670 12 80
mtr-miR2632c MIMAT0013398 Medicago truncatula miR2632c 12 80
mtr-miR2632b MIMAT0013397 Medicago truncatula miR2632b 12 80
mtr-miR2632a MIMAT0013396 Medicago truncatula miR2632a 12 80
bta-miR-2472 MIMAT0012063 Bos taurus miR-2472 12 80
ptr-miR-1266 MIMAT0007990 Pan troglodytes miR-1266 12 80
cfa-miR-345 MIMAT0006710 Canis familiaris miR-345 12 80
gga-miR-1747-3p MIMAT0026781 Gallus gallus miR-1747-3p 12 80
mdo-miR-1546-5p MIMAT0006146 Monodelphis domestica miR-1546-5p 12 80
oan-miR-1368 MIMAT0007033 Ornithorhynchus anatinus miR-1368 12 80
mml-miR-506-5p MIMAT0026745 Macaca mulatta miR-506-5p 12 80
hsa-miR-1266-5p MIMAT0005920 Homo sapiens miR-1266-5p 12 80
cre-miR1157-3p MIMAT0005408 Chlamydomonas reinhardtii miR1157-3p 12 80
cre-miR918 MIMAT0004385 Chlamydomonas reinhardtii miR918 12 80
mmu-miR-875-3p MIMAT0004938 Mus musculus miR-875-3p 12 80
mmu-miR-465c-3p MIMAT0004874 Mus musculus miR-465c-3p 12 80
mmu-miR-465b-3p MIMAT0004872 Mus musculus miR-465b-3p 12 80
bta-miR-345-3p MIMAT0012535 Bos taurus miR-345-3p 12 80
mmu-miR-670-5p MIMAT0003736 Mus musculus miR-670-5p 12 80
hsa-miR-670-5p MIMAT0010357 Homo sapiens miR-670-5p 12 80
hsa-miR-506-5p MIMAT0022701 Homo sapiens miR-506-5p 12 80
mmu-miR-465a-3p MIMAT0004217 Mus musculus miR-465a-3p 12 80
mmu-miR-345-3p MIMAT0004656 Mus musculus miR-345-3p 12 80
>chi-miR-345-3p MIMAT0036164 Capra hircus miR-345-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccctgaa 7
|||||||
Sbjct: 1 ccctgaa 7
>bfv-miR-BF1-3p MIMAT0035754 Bovine foamy miR-BF1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccctgaa 7
|||||||
Sbjct: 2 ccctgaa 8
>aly-miR846-5p MIMAT0017635 Arabidopsis lyrata miR846-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccctgaa 7
|||||||
Sbjct: 7 ccctgaa 1
>ssc-miR-345-3p MIMAT0013900 Sus scrofa miR-345-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccctgaa 7
|||||||
Sbjct: 1 ccctgaa 7
>mtr-miR2654 MIMAT0013439 Medicago truncatula miR2654
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccctgaa 7
|||||||
Sbjct: 8 ccctgaa 2
>cre-miR909.3 MIMAT0004392 Chlamydomonas reinhardtii miR909.3
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ccctgaa 7
|||||||
Sbjct: 7 ccctgaa 1
>hsa-miR-345-3p MIMAT0022698 Homo sapiens miR-345-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccctgaa 7
|||||||
Sbjct: 2 ccctgaa 8
>rno-miR-345-3p MIMAT0004655 Rattus norvegicus miR-345-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccctgaa 7
|||||||
Sbjct: 1 ccctgaa 7
>bdi-miR1432 MIMAT0035530 Brachypodium distachyon miR1432
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 6 cctgaa 1
>eca-miR-8919 MIMAT0034447 Equus caballus miR-8919
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 6 cctgaa 1
>eca-miR-8909 MIMAT0034437 Equus caballus miR-8909
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>ssa-miR-430a-5p MIMAT0032631 Salmo salar miR-430a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 3 cctgaa 8
>hsa-miR-7976 MIMAT0031179 Homo sapiens miR-7976
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccctga 6
||||||
Sbjct: 3 ccctga 8
>mdo-miR-7332-3p MIMAT0028673 Monodelphis domestica miR-7332-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>mml-miR-7199-3p MIMAT0028363 Macaca mulatta miR-7199-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 6 cctgaa 1
>mml-miR-7198-5p MIMAT0028360 Macaca mulatta miR-7198-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 6 cctgaa 1
>bma-miR-5872 MIMAT0026371 Brugia malayi miR-5872
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 7 cctgaa 2
>hsa-miR-6823-5p MIMAT0027546 Homo sapiens miR-6823-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 6 ccctga 1
>gga-miR-6665-5p MIMAT0025766 Gallus gallus miR-6665-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 3 cctgaa 8
>gga-miR-6634-5p MIMAT0025730 Gallus gallus miR-6634-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>bta-miR-6517 MIMAT0025528 Bos taurus miR-6517
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 6 ccctga 1
>mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 6 ccctga 1
>ggo-miR-1266 MIMAT0024268 Gorilla gorilla miR-1266
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>hco-miR-5957 MIMAT0023460 Haemonchus contortus miR-5957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>asu-miR-83-5p MIMAT0021475 Ascaris suum miR-83-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>hsa-miR-4518 MIMAT0019055 Homo sapiens miR-4518
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>tca-miR-3862-3p MIMAT0018801 Tribolium castaneum miR-3862-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 6 cctgaa 1
>vvi-miR3624-3p MIMAT0018012 Vitis vinifera miR3624-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 6 ccctga 1
>hsa-miR-4270 MIMAT0016900 Homo sapiens miR-4270
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 6 ccctga 1
>hsa-miR-4324 MIMAT0016876 Homo sapiens miR-4324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccctga 6
||||||
Sbjct: 1 ccctga 6
>ppy-miR-1297 MIMAT0016218 Pongo pygmaeus miR-1297
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 6 cctgaa 1
>ppy-miR-1266 MIMAT0016190 Pongo pygmaeus miR-1266
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>bmo-miR-3387-3p MIMAT0015586 Bombyx mori miR-3387-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 6 cctgaa 1
>eca-miR-345-3p MIMAT0013139 Equus caballus miR-345-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>eca-miR-670 MIMAT0013052 Equus caballus miR-670
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccctga 6
||||||
Sbjct: 3 ccctga 8
>mtr-miR2632c MIMAT0013398 Medicago truncatula miR2632c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>mtr-miR2632b MIMAT0013397 Medicago truncatula miR2632b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>mtr-miR2632a MIMAT0013396 Medicago truncatula miR2632a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>bta-miR-2472 MIMAT0012063 Bos taurus miR-2472
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 6 ccctga 1
>ptr-miR-1266 MIMAT0007990 Pan troglodytes miR-1266
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>cfa-miR-345 MIMAT0006710 Canis familiaris miR-345
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>gga-miR-1747-3p MIMAT0026781 Gallus gallus miR-1747-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>mdo-miR-1546-5p MIMAT0006146 Monodelphis domestica miR-1546-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 6 ccctga 1
>oan-miR-1368 MIMAT0007033 Ornithorhynchus anatinus miR-1368
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>mml-miR-506-5p MIMAT0026745 Macaca mulatta miR-506-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 8 cctgaa 3
>hsa-miR-1266-5p MIMAT0005920 Homo sapiens miR-1266-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>cre-miR1157-3p MIMAT0005408 Chlamydomonas reinhardtii
miR1157-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 6 cctgaa 1
>cre-miR918 MIMAT0004385 Chlamydomonas reinhardtii miR918
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 3 cctgaa 8
>mmu-miR-875-3p MIMAT0004938 Mus musculus miR-875-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>mmu-miR-465c-3p MIMAT0004874 Mus musculus miR-465c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>mmu-miR-465b-3p MIMAT0004872 Mus musculus miR-465b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>bta-miR-345-3p MIMAT0012535 Bos taurus miR-345-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
>mmu-miR-670-5p MIMAT0003736 Mus musculus miR-670-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccctga 6
||||||
Sbjct: 3 ccctga 8
>hsa-miR-670-5p MIMAT0010357 Homo sapiens miR-670-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccctga 6
||||||
Sbjct: 3 ccctga 8
>hsa-miR-506-5p MIMAT0022701 Homo sapiens miR-506-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgaa 7
||||||
Sbjct: 8 cctgaa 3
>mmu-miR-465a-3p MIMAT0004217 Mus musculus miR-465a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccctga 6
||||||
Sbjct: 8 ccctga 3
>mmu-miR-345-3p MIMAT0004656 Mus musculus miR-345-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgaa 7
||||||
Sbjct: 1 cctgaa 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 210
Number of extensions: 202
Number of successful extensions: 57
Number of sequences better than 100.0: 57
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 57
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
