BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hcmv-miR-us25-1*
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hcmv-miR-US25-1-3p MIMAT0004755 Human cytomegalovirus miR-US25-1-3p    14      20
ssa-miR-148b-5p MIMAT0032381 Salmo salar miR-148b-5p                   12      80
stu-miR7984d-5p MIMAT0030928 Solanum tuberosum miR7984d-5p             12      80
ptc-miR1444e MIMAT0030386 Populus trichocarpa miR1444e                 12      80
ptc-miR1444d MIMAT0030385 Populus trichocarpa miR1444d                 12      80
tca-miR-3049-3p MIMAT0018777 Tribolium castaneum miR-3049-3p           12      80
gga-miR-3538 MIMAT0016389 Gallus gallus miR-3538                       12      80
esi-miR3462-3p MIMAT0017778 Ectocarpus siliculosus miR3462-3p          12      80
hvt-miR-H2 MIMAT0012711 Herpesvirus of miR-H2                          12      80
mcmv-miR-m01-2-3p MIMAT0005535 Mouse cytomegalovirus miR-m01-2-3p      12      80
>hcmv-miR-US25-1-3p MIMAT0004755 Human cytomegalovirus
         miR-US25-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ccgaacg 7
         |||||||
Sbjct: 2 ccgaacg 8
>ssa-miR-148b-5p MIMAT0032381 Salmo salar miR-148b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgaac 6
         ||||||
Sbjct: 8 ccgaac 3
>stu-miR7984d-5p MIMAT0030928 Solanum tuberosum miR7984d-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ccgaac 6
         ||||||
Sbjct: 3 ccgaac 8
>ptc-miR1444e MIMAT0030386 Populus trichocarpa miR1444e
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgaacg 7
         ||||||
Sbjct: 1 cgaacg 6
>ptc-miR1444d MIMAT0030385 Populus trichocarpa miR1444d
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgaacg 7
         ||||||
Sbjct: 1 cgaacg 6
>tca-miR-3049-3p MIMAT0018777 Tribolium castaneum miR-3049-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgaacg 7
         ||||||
Sbjct: 8 cgaacg 3
>gga-miR-3538 MIMAT0016389 Gallus gallus miR-3538
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgaac 6
         ||||||
Sbjct: 6 ccgaac 1
>esi-miR3462-3p MIMAT0017778 Ectocarpus siliculosus miR3462-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ccgaac 6
         ||||||
Sbjct: 6 ccgaac 1
>hvt-miR-H2 MIMAT0012711 Herpesvirus of miR-H2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgaacg 7
         ||||||
Sbjct: 8 cgaacg 3
>mcmv-miR-m01-2-3p MIMAT0005535 Mouse cytomegalovirus
         miR-m01-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgaacg 7
         ||||||
Sbjct: 6 cgaacg 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 18
Number of extensions: 17
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)