BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-us25-1*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hcmv-miR-US25-1-3p MIMAT0004755 Human cytomegalovirus miR-US25-1-3p 14 20
ssa-miR-148b-5p MIMAT0032381 Salmo salar miR-148b-5p 12 80
stu-miR7984d-5p MIMAT0030928 Solanum tuberosum miR7984d-5p 12 80
ptc-miR1444e MIMAT0030386 Populus trichocarpa miR1444e 12 80
ptc-miR1444d MIMAT0030385 Populus trichocarpa miR1444d 12 80
tca-miR-3049-3p MIMAT0018777 Tribolium castaneum miR-3049-3p 12 80
gga-miR-3538 MIMAT0016389 Gallus gallus miR-3538 12 80
esi-miR3462-3p MIMAT0017778 Ectocarpus siliculosus miR3462-3p 12 80
hvt-miR-H2 MIMAT0012711 Herpesvirus of miR-H2 12 80
mcmv-miR-m01-2-3p MIMAT0005535 Mouse cytomegalovirus miR-m01-2-3p 12 80
>hcmv-miR-US25-1-3p MIMAT0004755 Human cytomegalovirus
miR-US25-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ccgaacg 7
|||||||
Sbjct: 2 ccgaacg 8
>ssa-miR-148b-5p MIMAT0032381 Salmo salar miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgaac 6
||||||
Sbjct: 8 ccgaac 3
>stu-miR7984d-5p MIMAT0030928 Solanum tuberosum miR7984d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ccgaac 6
||||||
Sbjct: 3 ccgaac 8
>ptc-miR1444e MIMAT0030386 Populus trichocarpa miR1444e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgaacg 7
||||||
Sbjct: 1 cgaacg 6
>ptc-miR1444d MIMAT0030385 Populus trichocarpa miR1444d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgaacg 7
||||||
Sbjct: 1 cgaacg 6
>tca-miR-3049-3p MIMAT0018777 Tribolium castaneum miR-3049-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgaacg 7
||||||
Sbjct: 8 cgaacg 3
>gga-miR-3538 MIMAT0016389 Gallus gallus miR-3538
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgaac 6
||||||
Sbjct: 6 ccgaac 1
>esi-miR3462-3p MIMAT0017778 Ectocarpus siliculosus miR3462-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ccgaac 6
||||||
Sbjct: 6 ccgaac 1
>hvt-miR-H2 MIMAT0012711 Herpesvirus of miR-H2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgaacg 7
||||||
Sbjct: 8 cgaacg 3
>mcmv-miR-m01-2-3p MIMAT0005535 Mouse cytomegalovirus
miR-m01-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgaacg 7
||||||
Sbjct: 6 cgaacg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 18
Number of extensions: 17
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)