BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m21*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-6891-5p MIMAT0027682 Homo sapiens miR-6891-5p 14 20
gga-miR-6543-3p MIMAT0025827 Gallus gallus miR-6543-3p 14 20
ppy-miR-3173 MIMAT0024395 Pongo pygmaeus miR-3173 14 20
mml-miR-3173 MIMAT0024331 Macaca mulatta miR-3173 14 20
ggo-miR-3173 MIMAT0024275 Gorilla gorilla miR-3173 14 20
ptr-miR-3173 MIMAT0024034 Pan troglodytes miR-3173 14 20
hsa-miR-3173-3p MIMAT0015048 Homo sapiens miR-3173-3p 14 20
mdv2-miR-M25-5p MIMAT0004469 Mareks disease miR-M25-5p 14 20
mdv2-miR-M21-5p MIMAT0004463 Mareks disease miR-M21-5p 14 20
tch-miR-708-5p MIMAT0036587 Tupaia chinensis miR-708-5p 12 80
tch-miR-28-5p MIMAT0036565 Tupaia chinensis miR-28-5p 12 80
gma-miR9723 MIMAT0036338 Glycine max miR9723 12 80
chi-miR-708-5p MIMAT0036290 Capra hircus miR-708-5p 12 80
chi-miR-28-5p MIMAT0036109 Capra hircus miR-28-5p 12 80
efu-miR-1343 MIMAT0035178 Eptesicus fuscus miR-1343 12 80
efu-miR-9306 MIMAT0034979 Eptesicus fuscus miR-9306 12 80
efu-miR-28 MIMAT0034949 Eptesicus fuscus miR-28 12 80
eca-miR-8947 MIMAT0034476 Equus caballus miR-8947 12 80
gra-miR8708 MIMAT0034095 Gossypium raimondii miR8708 12 80
gra-miR7504h MIMAT0034070 Gossypium raimondii miR7504h 12 80
gra-miR7504g MIMAT0034069 Gossypium raimondii miR7504g 12 80
str-miR-8365-5p MIMAT0033302 Strongyloides ratti miR-8365-5p 12 80
hbv-miR-B14RC-3p MIMAT0031772 Herpes B miR-B14RC-3p 12 80
mmu-miR-8100 MIMAT0031403 Mus musculus miR-8100 12 80
stu-miR7991c MIMAT0030867 Solanum tuberosum miR7991c 12 80
stu-miR7991b MIMAT0030866 Solanum tuberosum miR7991b 12 80
stu-miR7991a MIMAT0030865 Solanum tuberosum miR7991a 12 80
ghr-miR7504b MIMAT0029159 Gossypium hirsutum miR7504b 12 80
oan-miR-1421an-5p MIMAT0028972 Ornithorhynchus anatinus miR-1421... 12 80
hsa-miR-7154-3p MIMAT0028219 Homo sapiens miR-7154-3p 12 80
bma-miR-5876 MIMAT0026375 Brugia malayi miR-5876 12 80
mmu-miR-7081-5p MIMAT0028068 Mus musculus miR-7081-5p 12 80
mmu-miR-7012-5p MIMAT0027928 Mus musculus miR-7012-5p 12 80
mmu-miR-7011-5p MIMAT0027926 Mus musculus miR-7011-5p 12 80
hsa-miR-6894-5p MIMAT0027688 Homo sapiens miR-6894-5p 12 80
hsa-miR-6888-5p MIMAT0027676 Homo sapiens miR-6888-5p 12 80
hsa-miR-6851-5p MIMAT0027602 Homo sapiens miR-6851-5p 12 80
hsa-miR-6829-3p MIMAT0027559 Homo sapiens miR-6829-3p 12 80
hsa-miR-6797-5p MIMAT0027494 Homo sapiens miR-6797-5p 12 80
hsa-miR-6791-3p MIMAT0027483 Homo sapiens miR-6791-3p 12 80
cca-miR6108d MIMAT0024556 Cynara cardunculus miR6108d 12 80
ggo-miR-3612 MIMAT0024258 Gorilla gorilla miR-3612 12 80
cgr-miR-708 MIMAT0024001 Cricetulus griseus miR-708 12 80
cgr-miR-28-5p MIMAT0023878 Cricetulus griseus miR-28-5p 12 80
osa-miR5807 MIMAT0023279 Oryza sativa miR5807 12 80
mmu-miR-5621-5p MIMAT0022369 Mus musculus miR-5621-5p 12 80
osa-miR5523 MIMAT0022157 Oryza sativa miR5523 12 80
osa-miR5492 MIMAT0022125 Oryza sativa miR5492 12 80
aca-miR-5440 MIMAT0022062 Anolis carolinensis miR-5440 12 80
mtr-miR5254 MIMAT0021252 Medicago truncatula miR5254 12 80
mtr-miR5215 MIMAT0021150 Medicago truncatula miR5215 12 80
mtr-miR5209 MIMAT0021142 Medicago truncatula miR5209 12 80
mmu-miR-5110 MIMAT0020618 Mus musculus miR-5110 12 80
hsa-miR-4667-3p MIMAT0019744 Homo sapiens miR-4667-3p 12 80
hsa-miR-4459 MIMAT0018981 Homo sapiens miR-4459 12 80
hsa-miR-4448 MIMAT0018967 Homo sapiens miR-4448 12 80
tca-miR-3900-3p MIMAT0018905 Tribolium castaneum miR-3900-3p 12 80
tca-miR-3842-5p MIMAT0018728 Tribolium castaneum miR-3842-5p 12 80
ame-miR-3776 MIMAT0018553 Apis mellifera miR-3776 12 80
hsa-miR-3653-5p MIMAT0032110 Homo sapiens miR-3653-5p 12 80
hsa-miR-3612 MIMAT0017989 Homo sapiens miR-3612 12 80
ssc-miR-1224 MIMAT0017965 Sus scrofa miR-1224 12 80
hsa-miR-4266 MIMAT0016892 Homo sapiens miR-4266 12 80
ppy-miR-708 MIMAT0016100 Pongo pygmaeus miR-708 12 80
ppy-miR-650 MIMAT0016083 Pongo pygmaeus miR-650 12 80
hsv1-miR-H16 MIMAT0014694 Herpes Simplex miR-H16 12 80
ssc-miR-708-5p MIMAT0013945 Sus scrofa miR-708-5p 12 80
eca-miR-764-3p MIMAT0013244 Equus caballus miR-764-3p 12 80
eca-miR-28-5p MIMAT0013092 Equus caballus miR-28-5p 12 80
eca-miR-708 MIMAT0012993 Equus caballus miR-708 12 80
mml-miR-708-5p MIMAT0012785 Macaca mulatta miR-708-5p 12 80
mdo-miR-28 MIMAT0012759 Monodelphis domestica miR-28 12 80
aqc-miR477f MIMAT0012583 Aquilegia caerulea miR477f 12 80
hsa-miR-1976 MIMAT0009451 Homo sapiens miR-1976 12 80
bta-miR-708 MIMAT0009367 Bos taurus miR-708 12 80
bta-miR-28 MIMAT0009272 Bos taurus miR-28 12 80
ptr-miR-708 MIMAT0008315 Pan troglodytes miR-708 12 80
ptr-miR-650 MIMAT0008301 Pan troglodytes miR-650 12 80
cfa-miR-708 MIMAT0006643 Canis familiaris miR-708 12 80
mml-miR-650c MIMAT0006490 Macaca mulatta miR-650c 12 80
mml-miR-650b MIMAT0006489 Macaca mulatta miR-650b 12 80
mml-miR-650a MIMAT0006488 Macaca mulatta miR-650a 12 80
gga-miR-1760 MIMAT0007667 Gallus gallus miR-1760 12 80
gga-miR-1680-5p MIMAT0007566 Gallus gallus miR-1680-5p 12 80
gga-miR-1574-3p MIMAT0007435 Gallus gallus miR-1574-3p 12 80
oan-miR-1421am MIMAT0007313 Ornithorhynchus anatinus miR-1421am 12 80
oan-miR-1421aj-5p MIMAT0007307 Ornithorhynchus anatinus miR-1421... 12 80
oan-miR-1421ah-5p MIMAT0007303 Ornithorhynchus anatinus miR-1421... 12 80
oan-miR-1421ac-5p MIMAT0007257 Ornithorhynchus anatinus miR-1421... 12 80
oan-miR-1421y-5p MIMAT0007244 Ornithorhynchus anatinus miR-1421y-5p 12 80
oan-miR-1407 MIMAT0007217 Ornithorhynchus anatinus miR-1407 12 80
oan-miR-1421i-5p MIMAT0006979 Ornithorhynchus anatinus miR-1421i-5p 12 80
hsa-miR-1249-5p MIMAT0032029 Homo sapiens miR-1249-5p 12 80
rno-miR-708-5p MIMAT0005331 Rattus norvegicus miR-708-5p 12 80
hsa-miR-708-5p MIMAT0004926 Homo sapiens miR-708-5p 12 80
sme-miR-184-5p MIMAT0012116 Schmidtea mediterranea miR-184-5p 12 80
mmu-miR-712-5p MIMAT0003502 Mus musculus miR-712-5p 12 80
mmu-miR-708-5p MIMAT0004828 Mus musculus miR-708-5p 12 80
mmu-miR-764-3p MIMAT0003895 Mus musculus miR-764-3p 12 80
mmu-miR-1249-5p MIMAT0014804 Mus musculus miR-1249-5p 12 80
hsa-miR-766-5p MIMAT0022714 Homo sapiens miR-766-5p 12 80
hsa-miR-650 MIMAT0003320 Homo sapiens miR-650 12 80
ppa-miR-28 MIMAT0002359 Pan paniscus miR-28 12 80
lla-miR-28 MIMAT0002358 Lagothrix lagotricha miR-28 12 80
sla-miR-28 MIMAT0002357 Saguinus labiatus miR-28 12 80
mne-miR-28 MIMAT0002356 Macaca nemestrina miR-28 12 80
ppy-miR-28 MIMAT0002355 Pongo pygmaeus miR-28 12 80
ggo-miR-28 MIMAT0002354 Gorilla gorilla miR-28 12 80
ptr-miR-28 MIMAT0002353 Pan troglodytes miR-28 12 80
mml-miR-28-5p MIMAT0002352 Macaca mulatta miR-28-5p 12 80
age-miR-28 MIMAT0002351 Ateles geoffroyi miR-28 12 80
ssc-miR-28-5p MIMAT0002136 Sus scrofa miR-28-5p 12 80
ebv-miR-BART2-3p MIMAT0004744 Epstein Barr miR-BART2-3p 12 80
ath-miR398a-5p MIMAT0031910 Arabidopsis thaliana miR398a-5p 12 80
rno-miR-28-5p MIMAT0000800 Rattus norvegicus miR-28-5p 12 80
mmu-miR-28a-5p MIMAT0000653 Mus musculus miR-28a-5p 12 80
hsa-miR-28-5p MIMAT0000085 Homo sapiens miR-28-5p 12 80
>hsa-miR-6891-5p MIMAT0027682 Homo sapiens miR-6891-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctcctt 7
|||||||
Sbjct: 8 cctcctt 2
>gga-miR-6543-3p MIMAT0025827 Gallus gallus miR-6543-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctcctt 7
|||||||
Sbjct: 2 cctcctt 8
>ppy-miR-3173 MIMAT0024395 Pongo pygmaeus miR-3173
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctcctt 7
|||||||
Sbjct: 7 cctcctt 1
>mml-miR-3173 MIMAT0024331 Macaca mulatta miR-3173
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctcctt 7
|||||||
Sbjct: 8 cctcctt 2
>ggo-miR-3173 MIMAT0024275 Gorilla gorilla miR-3173
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctcctt 7
|||||||
Sbjct: 8 cctcctt 2
>ptr-miR-3173 MIMAT0024034 Pan troglodytes miR-3173
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctcctt 7
|||||||
Sbjct: 8 cctcctt 2
>hsa-miR-3173-3p MIMAT0015048 Homo sapiens miR-3173-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctcctt 7
|||||||
Sbjct: 8 cctcctt 2
>mdv2-miR-M25-5p MIMAT0004469 Mareks disease miR-M25-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctcctt 7
|||||||
Sbjct: 1 cctcctt 7
>mdv2-miR-M21-5p MIMAT0004463 Mareks disease miR-M21-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctcctt 7
|||||||
Sbjct: 2 cctcctt 8
>tch-miR-708-5p MIMAT0036587 Tupaia chinensis miR-708-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>tch-miR-28-5p MIMAT0036565 Tupaia chinensis miR-28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>gma-miR9723 MIMAT0036338 Glycine max miR9723
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 8 ctcctt 3
>chi-miR-708-5p MIMAT0036290 Capra hircus miR-708-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>chi-miR-28-5p MIMAT0036109 Capra hircus miR-28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>efu-miR-1343 MIMAT0035178 Eptesicus fuscus miR-1343
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctcct 6
||||||
Sbjct: 1 cctcct 6
>efu-miR-9306 MIMAT0034979 Eptesicus fuscus miR-9306
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcctt 7
||||||
Sbjct: 2 ctcctt 7
>efu-miR-28 MIMAT0034949 Eptesicus fuscus miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>eca-miR-8947 MIMAT0034476 Equus caballus miR-8947
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>gra-miR8708 MIMAT0034095 Gossypium raimondii miR8708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>gra-miR7504h MIMAT0034070 Gossypium raimondii miR7504h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>gra-miR7504g MIMAT0034069 Gossypium raimondii miR7504g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>str-miR-8365-5p MIMAT0033302 Strongyloides ratti miR-8365-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcctt 7
||||||
Sbjct: 3 ctcctt 8
>hbv-miR-B14RC-3p MIMAT0031772 Herpes B miR-B14RC-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>mmu-miR-8100 MIMAT0031403 Mus musculus miR-8100
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>stu-miR7991c MIMAT0030867 Solanum tuberosum miR7991c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>stu-miR7991b MIMAT0030866 Solanum tuberosum miR7991b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>stu-miR7991a MIMAT0030865 Solanum tuberosum miR7991a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>ghr-miR7504b MIMAT0029159 Gossypium hirsutum miR7504b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>oan-miR-1421an-5p MIMAT0028972 Ornithorhynchus anatinus
miR-1421an-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsa-miR-7154-3p MIMAT0028219 Homo sapiens miR-7154-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>bma-miR-5876 MIMAT0026375 Brugia malayi miR-5876
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>mmu-miR-7081-5p MIMAT0028068 Mus musculus miR-7081-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>mmu-miR-7012-5p MIMAT0027928 Mus musculus miR-7012-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>mmu-miR-7011-5p MIMAT0027926 Mus musculus miR-7011-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsa-miR-6894-5p MIMAT0027688 Homo sapiens miR-6894-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsa-miR-6888-5p MIMAT0027676 Homo sapiens miR-6888-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>hsa-miR-6851-5p MIMAT0027602 Homo sapiens miR-6851-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsa-miR-6829-3p MIMAT0027559 Homo sapiens miR-6829-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctcct 6
||||||
Sbjct: 3 cctcct 8
>hsa-miR-6797-5p MIMAT0027494 Homo sapiens miR-6797-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsa-miR-6791-3p MIMAT0027483 Homo sapiens miR-6791-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctcct 6
||||||
Sbjct: 3 cctcct 8
>cca-miR6108d MIMAT0024556 Cynara cardunculus miR6108d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 8 ctcctt 3
>ggo-miR-3612 MIMAT0024258 Gorilla gorilla miR-3612
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>cgr-miR-708 MIMAT0024001 Cricetulus griseus miR-708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>cgr-miR-28-5p MIMAT0023878 Cricetulus griseus miR-28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>osa-miR5807 MIMAT0023279 Oryza sativa miR5807
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>mmu-miR-5621-5p MIMAT0022369 Mus musculus miR-5621-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>osa-miR5523 MIMAT0022157 Oryza sativa miR5523
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>osa-miR5492 MIMAT0022125 Oryza sativa miR5492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 8 ctcctt 3
>aca-miR-5440 MIMAT0022062 Anolis carolinensis miR-5440
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>mtr-miR5254 MIMAT0021252 Medicago truncatula miR5254
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>mtr-miR5215 MIMAT0021150 Medicago truncatula miR5215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>mtr-miR5209 MIMAT0021142 Medicago truncatula miR5209
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>mmu-miR-5110 MIMAT0020618 Mus musculus miR-5110
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>hsa-miR-4667-3p MIMAT0019744 Homo sapiens miR-4667-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctcct 6
||||||
Sbjct: 3 cctcct 8
>hsa-miR-4459 MIMAT0018981 Homo sapiens miR-4459
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>hsa-miR-4448 MIMAT0018967 Homo sapiens miR-4448
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcctt 7
||||||
Sbjct: 3 ctcctt 8
>tca-miR-3900-3p MIMAT0018905 Tribolium castaneum miR-3900-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>tca-miR-3842-5p MIMAT0018728 Tribolium castaneum miR-3842-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>ame-miR-3776 MIMAT0018553 Apis mellifera miR-3776
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsa-miR-3653-5p MIMAT0032110 Homo sapiens miR-3653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctcct 6
||||||
Sbjct: 1 cctcct 6
>hsa-miR-3612 MIMAT0017989 Homo sapiens miR-3612
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>ssc-miR-1224 MIMAT0017965 Sus scrofa miR-1224
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctcct 6
||||||
Sbjct: 3 cctcct 8
>hsa-miR-4266 MIMAT0016892 Homo sapiens miR-4266
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>ppy-miR-708 MIMAT0016100 Pongo pygmaeus miR-708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>ppy-miR-650 MIMAT0016083 Pongo pygmaeus miR-650
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsv1-miR-H16 MIMAT0014694 Herpes Simplex miR-H16
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>ssc-miR-708-5p MIMAT0013945 Sus scrofa miR-708-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>eca-miR-764-3p MIMAT0013244 Equus caballus miR-764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>eca-miR-28-5p MIMAT0013092 Equus caballus miR-28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>eca-miR-708 MIMAT0012993 Equus caballus miR-708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>mml-miR-708-5p MIMAT0012785 Macaca mulatta miR-708-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>mdo-miR-28 MIMAT0012759 Monodelphis domestica miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>aqc-miR477f MIMAT0012583 Aquilegia caerulea miR477f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcctt 7
||||||
Sbjct: 3 ctcctt 8
>hsa-miR-1976 MIMAT0009451 Homo sapiens miR-1976
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctcct 6
||||||
Sbjct: 1 cctcct 6
>bta-miR-708 MIMAT0009367 Bos taurus miR-708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>bta-miR-28 MIMAT0009272 Bos taurus miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>ptr-miR-708 MIMAT0008315 Pan troglodytes miR-708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>ptr-miR-650 MIMAT0008301 Pan troglodytes miR-650
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>cfa-miR-708 MIMAT0006643 Canis familiaris miR-708
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>mml-miR-650c MIMAT0006490 Macaca mulatta miR-650c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>mml-miR-650b MIMAT0006489 Macaca mulatta miR-650b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>mml-miR-650a MIMAT0006488 Macaca mulatta miR-650a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>gga-miR-1760 MIMAT0007667 Gallus gallus miR-1760
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctcct 6
||||||
Sbjct: 3 cctcct 8
>gga-miR-1680-5p MIMAT0007566 Gallus gallus miR-1680-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cctcct 6
||||||
Sbjct: 3 cctcct 8
>gga-miR-1574-3p MIMAT0007435 Gallus gallus miR-1574-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 8 cctcct 3
>oan-miR-1421am MIMAT0007313 Ornithorhynchus anatinus miR-1421am
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>oan-miR-1421aj-5p MIMAT0007307 Ornithorhynchus anatinus
miR-1421aj-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>oan-miR-1421ah-5p MIMAT0007303 Ornithorhynchus anatinus
miR-1421ah-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>oan-miR-1421ac-5p MIMAT0007257 Ornithorhynchus anatinus
miR-1421ac-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>oan-miR-1421y-5p MIMAT0007244 Ornithorhynchus anatinus
miR-1421y-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>oan-miR-1407 MIMAT0007217 Ornithorhynchus anatinus miR-1407
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>oan-miR-1421i-5p MIMAT0006979 Ornithorhynchus anatinus
miR-1421i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsa-miR-1249-5p MIMAT0032029 Homo sapiens miR-1249-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>rno-miR-708-5p MIMAT0005331 Rattus norvegicus miR-708-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>hsa-miR-708-5p MIMAT0004926 Homo sapiens miR-708-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>sme-miR-184-5p MIMAT0012116 Schmidtea mediterranea miR-184-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcctt 7
||||||
Sbjct: 2 ctcctt 7
>mmu-miR-712-5p MIMAT0003502 Mus musculus miR-712-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcctt 7
||||||
Sbjct: 1 ctcctt 6
>mmu-miR-708-5p MIMAT0004828 Mus musculus miR-708-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>mmu-miR-764-3p MIMAT0003895 Mus musculus miR-764-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>mmu-miR-1249-5p MIMAT0014804 Mus musculus miR-1249-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsa-miR-766-5p MIMAT0022714 Homo sapiens miR-766-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>hsa-miR-650 MIMAT0003320 Homo sapiens miR-650
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cctcct 6
||||||
Sbjct: 6 cctcct 1
>ppa-miR-28 MIMAT0002359 Pan paniscus miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>lla-miR-28 MIMAT0002358 Lagothrix lagotricha miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>sla-miR-28 MIMAT0002357 Saguinus labiatus miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>mne-miR-28 MIMAT0002356 Macaca nemestrina miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>ppy-miR-28 MIMAT0002355 Pongo pygmaeus miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>ggo-miR-28 MIMAT0002354 Gorilla gorilla miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>ptr-miR-28 MIMAT0002353 Pan troglodytes miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>mml-miR-28-5p MIMAT0002352 Macaca mulatta miR-28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>age-miR-28 MIMAT0002351 Ateles geoffroyi miR-28
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>ssc-miR-28-5p MIMAT0002136 Sus scrofa miR-28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>ebv-miR-BART2-3p MIMAT0004744 Epstein Barr miR-BART2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>ath-miR398a-5p MIMAT0031910 Arabidopsis thaliana miR398a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>rno-miR-28-5p MIMAT0000800 Rattus norvegicus miR-28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>mmu-miR-28a-5p MIMAT0000653 Mus musculus miR-28a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
>hsa-miR-28-5p MIMAT0000085 Homo sapiens miR-28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcctt 7
||||||
Sbjct: 6 ctcctt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 149
Number of extensions: 140
Number of successful extensions: 117
Number of sequences better than 100.0: 117
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 117
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
