BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart7*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ebv-miR-BART7-5p MIMAT0004815 Epstein Barr miR-BART7-5p 16 6.9
rno-miR-1956-5p MIMAT0035735 Rattus norvegicus miR-1956-5p 14 27
eca-miR-9122 MIMAT0034672 Equus caballus miR-9122 14 27
nta-miR6161b MIMAT0024775 Nicotiana tabacum miR6161b 14 27
nta-miR6161a MIMAT0024774 Nicotiana tabacum miR6161a 14 27
cgr-miR-1956 MIMAT0023830 Cricetulus griseus miR-1956 14 27
mmu-miR-5124a MIMAT0020634 Mus musculus miR-5124a 14 27
hsa-miR-4638-3p MIMAT0019696 Homo sapiens miR-4638-3p 14 27
hsa-miR-3690 MIMAT0018119 Homo sapiens miR-3690 14 27
mmu-miR-1956 MIMAT0009428 Mus musculus miR-1956 14 27
dme-miR-982-5p MIMAT0005498 Drosophila melanogaster miR-982-5p 14 27
mne-miR-198 MIMAT0002613 Macaca nemestrina miR-198 14 27
lla-miR-198 MIMAT0002612 Lagothrix lagotricha miR-198 14 27
sla-miR-198 MIMAT0002611 Saguinus labiatus miR-198 14 27
mml-miR-198 MIMAT0002610 Macaca mulatta miR-198 14 27
ptr-miR-198 MIMAT0002609 Pan troglodytes miR-198 14 27
ppy-miR-198 MIMAT0002608 Pongo pygmaeus miR-198 14 27
ppa-miR-198 MIMAT0002607 Pan paniscus miR-198 14 27
age-miR-198 MIMAT0002606 Ateles geoffroyi miR-198 14 27
ggo-miR-198 MIMAT0002605 Gorilla gorilla miR-198 14 27
hsa-miR-198 MIMAT0000228 Homo sapiens miR-198 14 27
>ebv-miR-BART7-5p MIMAT0004815 Epstein Barr miR-BART7-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cctggacc 8
||||||||
Sbjct: 1 cctggacc 8
>rno-miR-1956-5p MIMAT0035735 Rattus norvegicus miR-1956-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctggac 7
|||||||
Sbjct: 8 cctggac 2
>eca-miR-9122 MIMAT0034672 Equus caballus miR-9122
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctggac 7
|||||||
Sbjct: 2 cctggac 8
>nta-miR6161b MIMAT0024775 Nicotiana tabacum miR6161b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctggacc 8
|||||||
Sbjct: 2 ctggacc 8
>nta-miR6161a MIMAT0024774 Nicotiana tabacum miR6161a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctggacc 8
|||||||
Sbjct: 2 ctggacc 8
>cgr-miR-1956 MIMAT0023830 Cricetulus griseus miR-1956
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctggac 7
|||||||
Sbjct: 8 cctggac 2
>mmu-miR-5124a MIMAT0020634 Mus musculus miR-5124a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>hsa-miR-4638-3p MIMAT0019696 Homo sapiens miR-4638-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctggac 7
|||||||
Sbjct: 1 cctggac 7
>hsa-miR-3690 MIMAT0018119 Homo sapiens miR-3690
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctggac 7
|||||||
Sbjct: 2 cctggac 8
>mmu-miR-1956 MIMAT0009428 Mus musculus miR-1956
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cctggac 7
|||||||
Sbjct: 8 cctggac 2
>dme-miR-982-5p MIMAT0005498 Drosophila melanogaster miR-982-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cctggac 7
|||||||
Sbjct: 2 cctggac 8
>mne-miR-198 MIMAT0002613 Macaca nemestrina miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>lla-miR-198 MIMAT0002612 Lagothrix lagotricha miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>sla-miR-198 MIMAT0002611 Saguinus labiatus miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>mml-miR-198 MIMAT0002610 Macaca mulatta miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>ptr-miR-198 MIMAT0002609 Pan troglodytes miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>ppy-miR-198 MIMAT0002608 Pongo pygmaeus miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>ppa-miR-198 MIMAT0002607 Pan paniscus miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>age-miR-198 MIMAT0002606 Ateles geoffroyi miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>ggo-miR-198 MIMAT0002605 Gorilla gorilla miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
>hsa-miR-198 MIMAT0000228 Homo sapiens miR-198
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctggacc 8
|||||||
Sbjct: 7 ctggacc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 195
Number of extensions: 173
Number of successful extensions: 112
Number of sequences better than 100.0: 21
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
