BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hhv6b-miR-ro6-2*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hhv6b-miR-Ro6-2-5p MIMAT0026458 Human herpesvirus miR-Ro6-2-5p 16 6.9
pxy-miR-8528b MIMAT0033770 Plutella xylostella miR-8528b 14 27
pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a 14 27
hsa-miR-8072 MIMAT0030999 Homo sapiens miR-8072 14 27
gga-miR-7475-5p MIMAT0029104 Gallus gallus miR-7475-5p 14 27
gga-miR-6556-3p MIMAT0025622 Gallus gallus miR-6556-3p 14 27
ppy-miR-2861 MIMAT0024405 Pongo pygmaeus miR-2861 14 27
hsa-miR-3960 MIMAT0019337 Homo sapiens miR-3960 14 27
mmu-miR-3960 MIMAT0019336 Mus musculus miR-3960 14 27
hsa-miR-4467 MIMAT0018994 Homo sapiens miR-4467 14 27
bta-miR-2885 MIMAT0013843 Bos taurus miR-2885 14 27
>hhv6b-miR-Ro6-2-5p MIMAT0026458 Human herpesvirus miR-Ro6-2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cgccgccg 8
||||||||
Sbjct: 1 cgccgccg 8
>pxy-miR-8528b MIMAT0033770 Plutella xylostella miR-8528b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gccgccg 8
|||||||
Sbjct: 8 gccgccg 2
>pxy-miR-8528a MIMAT0033748 Plutella xylostella miR-8528a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgccgcc 7
|||||||
Sbjct: 8 cgccgcc 2
>hsa-miR-8072 MIMAT0030999 Homo sapiens miR-8072
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgccgcc 7
|||||||
Sbjct: 7 cgccgcc 1
>gga-miR-7475-5p MIMAT0029104 Gallus gallus miR-7475-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgccgcc 7
|||||||
Sbjct: 2 cgccgcc 8
>gga-miR-6556-3p MIMAT0025622 Gallus gallus miR-6556-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgccgcc 7
|||||||
Sbjct: 7 cgccgcc 1
>ppy-miR-2861 MIMAT0024405 Pongo pygmaeus miR-2861
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgccgcc 7
|||||||
Sbjct: 7 cgccgcc 1
>hsa-miR-3960 MIMAT0019337 Homo sapiens miR-3960
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgccgcc 7
|||||||
Sbjct: 7 cgccgcc 1
>mmu-miR-3960 MIMAT0019336 Mus musculus miR-3960
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgccgcc 7
|||||||
Sbjct: 7 cgccgcc 1
>hsa-miR-4467 MIMAT0018994 Homo sapiens miR-4467
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgccgcc 7
|||||||
Sbjct: 8 cgccgcc 2
>bta-miR-2885 MIMAT0013843 Bos taurus miR-2885
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gccgccg 8
|||||||
Sbjct: 7 gccgccg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 72
Number of extensions: 60
Number of successful extensions: 46
Number of sequences better than 100.0: 11
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
