BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r111.1-3
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv1-miR-H8-3p MIMAT0012598 Herpes Simplex miR-H8-3p 14 20
hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p 14 20
bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14 12 80
efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208 12 80
efu-miR-9200b MIMAT0034786 Eptesicus fuscus miR-9200b 12 80
eca-miR-8988 MIMAT0034525 Equus caballus miR-8988 12 80
eca-miR-8952 MIMAT0034481 Equus caballus miR-8952 12 80
ssa-miR-128-4-5p MIMAT0032317 Salmo salar miR-128-4-5p 12 80
prd-miR-7931-5p MIMAT0030710 Panagrellus redivivus miR-7931-5p 12 80
prd-miR-7911b-5p MIMAT0030648 Panagrellus redivivus miR-7911b-5p 12 80
prd-miR-7911a-5p MIMAT0030646 Panagrellus redivivus miR-7911a-5p 12 80
mdo-miR-7306-5p MIMAT0028606 Monodelphis domestica miR-7306-5p 12 80
ssc-miR-7137-5p MIMAT0028149 Sus scrofa miR-7137-5p 12 80
mmu-miR-7082-3p MIMAT0028071 Mus musculus miR-7082-3p 12 80
mmu-miR-7069-5p MIMAT0028044 Mus musculus miR-7069-5p 12 80
hsa-miR-6885-5p MIMAT0027670 Homo sapiens miR-6885-5p 12 80
hsa-miR-6805-5p MIMAT0027510 Homo sapiens miR-6805-5p 12 80
prv-miR-LLT8 MIMAT0025311 Pseudorabies virus miR-LLT8 12 80
rno-miR-3072 MIMAT0025071 Rattus norvegicus miR-3072 12 80
mmu-miR-6244 MIMAT0024864 Mus musculus miR-6244 12 80
ppy-miR-3943 MIMAT0024363 Pongo pygmaeus miR-3943 12 80
ggo-miR-3943 MIMAT0024210 Gorilla gorilla miR-3943 12 80
ggo-miR-4488 MIMAT0024152 Gorilla gorilla miR-4488 12 80
ptr-miR-3943 MIMAT0024046 Pan troglodytes miR-3943 12 80
cgr-miR-3072-3p MIMAT0023893 Cricetulus griseus miR-3072-3p 12 80
aca-miR-128-5p MIMAT0021732 Anolis carolinensis miR-128-5p 12 80
hsa-miR-3943 MIMAT0018359 Homo sapiens miR-3943 12 80
hsv2-miR-H5 MIMAT0015650 Herpes Simplex miR-H5 12 80
mmu-miR-3104-5p MIMAT0014939 Mus musculus miR-3104-5p 12 80
mmu-miR-3072-3p MIMAT0014853 Mus musculus miR-3072-3p 12 80
tgu-miR-128-2-5p MIMAT0026977 Taeniopygia guttata miR-128-2-5p 12 80
bta-miR-1777b MIMAT0012046 Bos taurus miR-1777b 12 80
bta-miR-2454-5p MIMAT0012035 Bos taurus miR-2454-5p 12 80
bta-miR-2328-5p MIMAT0011857 Bos taurus miR-2328-5p 12 80
bta-miR-2305 MIMAT0011817 Bos taurus miR-2305 12 80
mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895 12 80
mml-miR-128b-5p MIMAT0026814 Macaca mulatta miR-128b-5p 12 80
mcmv-miR-M23-2-3p MIMAT0005545 Mouse cytomegalovirus miR-M23-2-3p 12 80
mdo-miR-128a-5p MIMAT0026662 Monodelphis domestica miR-128a-5p 12 80
gga-miR-128-2-5p MIMAT0026506 Gallus gallus miR-128-2-5p 12 80
rno-miR-128-2-5p MIMAT0017119 Rattus norvegicus miR-128-2-5p 12 80
hsa-miR-328-5p MIMAT0026486 Homo sapiens miR-328-5p 12 80
hsa-miR-128-2-5p MIMAT0031095 Homo sapiens miR-128-2-5p 12 80
mmu-miR-128-2-5p MIMAT0017069 Mus musculus miR-128-2-5p 12 80
rno-miR-326-5p MIMAT0017028 Rattus norvegicus miR-326-5p 12 80
mmu-miR-326-5p MIMAT0017027 Mus musculus miR-326-5p 12 80
>hsv1-miR-H8-3p MIMAT0012598 Herpes Simplex miR-H8-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cgggggc 7
|||||||
Sbjct: 7 cgggggc 1
>hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgggggc 7
|||||||
Sbjct: 1 cgggggc 7
>bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggggg 6
||||||
Sbjct: 1 cggggg 6
>efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggggg 6
||||||
Sbjct: 8 cggggg 3
>efu-miR-9200b MIMAT0034786 Eptesicus fuscus miR-9200b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggggg 6
||||||
Sbjct: 3 cggggg 8
>eca-miR-8988 MIMAT0034525 Equus caballus miR-8988
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 8 gggggc 3
>eca-miR-8952 MIMAT0034481 Equus caballus miR-8952
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 7 gggggc 2
>ssa-miR-128-4-5p MIMAT0032317 Salmo salar miR-128-4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>prd-miR-7931-5p MIMAT0030710 Panagrellus redivivus miR-7931-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>prd-miR-7911b-5p MIMAT0030648 Panagrellus redivivus
miR-7911b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 6 gggggc 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggggg 6
||||||
Sbjct: 8 cggggg 3
>prd-miR-7911a-5p MIMAT0030646 Panagrellus redivivus
miR-7911a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 6 gggggc 1
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggggg 6
||||||
Sbjct: 8 cggggg 3
>mdo-miR-7306-5p MIMAT0028606 Monodelphis domestica miR-7306-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>ssc-miR-7137-5p MIMAT0028149 Sus scrofa miR-7137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggggg 6
||||||
Sbjct: 1 cggggg 6
>mmu-miR-7082-3p MIMAT0028071 Mus musculus miR-7082-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 6 gggggc 1
>mmu-miR-7069-5p MIMAT0028044 Mus musculus miR-7069-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>hsa-miR-6885-5p MIMAT0027670 Homo sapiens miR-6885-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>hsa-miR-6805-5p MIMAT0027510 Homo sapiens miR-6805-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>prv-miR-LLT8 MIMAT0025311 Pseudorabies virus miR-LLT8
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>rno-miR-3072 MIMAT0025071 Rattus norvegicus miR-3072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 7 gggggc 2
>mmu-miR-6244 MIMAT0024864 Mus musculus miR-6244
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>ppy-miR-3943 MIMAT0024363 Pongo pygmaeus miR-3943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 8 gggggc 3
>ggo-miR-3943 MIMAT0024210 Gorilla gorilla miR-3943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 8 gggggc 3
>ggo-miR-4488 MIMAT0024152 Gorilla gorilla miR-4488
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>ptr-miR-3943 MIMAT0024046 Pan troglodytes miR-3943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 8 gggggc 3
>cgr-miR-3072-3p MIMAT0023893 Cricetulus griseus miR-3072-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 7 gggggc 2
>aca-miR-128-5p MIMAT0021732 Anolis carolinensis miR-128-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>hsa-miR-3943 MIMAT0018359 Homo sapiens miR-3943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 8 gggggc 3
>hsv2-miR-H5 MIMAT0015650 Herpes Simplex miR-H5
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>mmu-miR-3104-5p MIMAT0014939 Mus musculus miR-3104-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>mmu-miR-3072-3p MIMAT0014853 Mus musculus miR-3072-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 7 gggggc 2
>tgu-miR-128-2-5p MIMAT0026977 Taeniopygia guttata miR-128-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>bta-miR-1777b MIMAT0012046 Bos taurus miR-1777b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>bta-miR-2454-5p MIMAT0012035 Bos taurus miR-2454-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>bta-miR-2328-5p MIMAT0011857 Bos taurus miR-2328-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gggggc 7
||||||
Sbjct: 6 gggggc 1
>bta-miR-2305 MIMAT0011817 Bos taurus miR-2305
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cggggg 6
||||||
Sbjct: 1 cggggg 6
>mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cggggg 6
||||||
Sbjct: 6 cggggg 1
>mml-miR-128b-5p MIMAT0026814 Macaca mulatta miR-128b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>mcmv-miR-M23-2-3p MIMAT0005545 Mouse cytomegalovirus
miR-M23-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>mdo-miR-128a-5p MIMAT0026662 Monodelphis domestica miR-128a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>gga-miR-128-2-5p MIMAT0026506 Gallus gallus miR-128-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>rno-miR-128-2-5p MIMAT0017119 Rattus norvegicus miR-128-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>hsa-miR-328-5p MIMAT0026486 Homo sapiens miR-328-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 3 gggggc 8
>hsa-miR-128-2-5p MIMAT0031095 Homo sapiens miR-128-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>mmu-miR-128-2-5p MIMAT0017069 Mus musculus miR-128-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>rno-miR-326-5p MIMAT0017028 Rattus norvegicus miR-326-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
>mmu-miR-326-5p MIMAT0017027 Mus musculus miR-326-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gggggc 7
||||||
Sbjct: 1 gggggc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 78
Number of extensions: 76
Number of successful extensions: 48
Number of sequences better than 100.0: 46
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 48
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
