BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b6*
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bhv1-miR-B6-3p MIMAT0013968 Bovine herpesvirus miR-B6-3p               16   6.9  
efu-miR-139 MIMAT0035163 Eptesicus fuscus miR-139                      14      27
eca-miR-9167 MIMAT0034745 Equus caballus miR-9167                      14      27
cgr-miR-139-3p MIMAT0023766 Cricetulus griseus miR-139-3p              14      27
hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091                        14      27
ppy-miR-139-3p MIMAT0015762 Pongo pygmaeus miR-139-3p                  14      27
eca-miR-139-3p MIMAT0012984 Equus caballus miR-139-3p                  14      27
ptr-miR-139 MIMAT0008035 Pan troglodytes miR-139                       14      27
cfa-miR-139 MIMAT0006645 Canis familiaris miR-139                      14      27
mml-miR-139-3p MIMAT0006196 Macaca mulatta miR-139-3p                  14      27
mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p                 14      27
ssc-miR-139-3p MIMAT0022921 Sus scrofa miR-139-3p                      14      27
rno-miR-139-3p MIMAT0004735 Rattus norvegicus miR-139-3p               14      27
mmu-miR-139-3p MIMAT0004662 Mus musculus miR-139-3p                    14      27
hsa-miR-139-3p MIMAT0004552 Homo sapiens miR-139-3p                    14      27
>bhv1-miR-B6-3p MIMAT0013968 Bovine herpesvirus miR-B6-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 cgtctccg 8
         ||||||||
Sbjct: 1 cgtctccg 8
>efu-miR-139 MIMAT0035163 Eptesicus fuscus miR-139
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 8 cgtctcc 2
>eca-miR-9167 MIMAT0034745 Equus caballus miR-9167
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gtctccg 8
         |||||||
Sbjct: 2 gtctccg 8
>cgr-miR-139-3p MIMAT0023766 Cricetulus griseus miR-139-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 8 cgtctcc 2
>hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gtctccg 8
         |||||||
Sbjct: 8 gtctccg 2
>ppy-miR-139-3p MIMAT0015762 Pongo pygmaeus miR-139-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 7 cgtctcc 1
>eca-miR-139-3p MIMAT0012984 Equus caballus miR-139-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 7 cgtctcc 1
>ptr-miR-139 MIMAT0008035 Pan troglodytes miR-139
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 7 cgtctcc 1
>cfa-miR-139 MIMAT0006645 Canis familiaris miR-139
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 8 cgtctcc 2
>mml-miR-139-3p MIMAT0006196 Macaca mulatta miR-139-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 7 cgtctcc 1
>mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gtctccg 8
         |||||||
Sbjct: 1 gtctccg 7
>ssc-miR-139-3p MIMAT0022921 Sus scrofa miR-139-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 8 cgtctcc 2
>rno-miR-139-3p MIMAT0004735 Rattus norvegicus miR-139-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 8 cgtctcc 2
>mmu-miR-139-3p MIMAT0004662 Mus musculus miR-139-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 8 cgtctcc 2
>hsa-miR-139-3p MIMAT0004552 Homo sapiens miR-139-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 cgtctcc 7
         |||||||
Sbjct: 8 cgtctcc 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 96
Number of extensions: 80
Number of successful extensions: 61
Number of sequences better than 100.0: 15
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)