BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m01-2*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mcmv-miR-m01-2-3p MIMAT0005535 Mouse cytomegalovirus miR-m01-2-3p 16 6.9
bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333 14 27
osa-miR439i MIMAT0001598 Oryza sativa miR439i 14 27
osa-miR439h MIMAT0001596 Oryza sativa miR439h 14 27
osa-miR439g MIMAT0001595 Oryza sativa miR439g 14 27
osa-miR439f MIMAT0001594 Oryza sativa miR439f 14 27
osa-miR439e MIMAT0001593 Oryza sativa miR439e 14 27
osa-miR439d MIMAT0001592 Oryza sativa miR439d 14 27
osa-miR439c MIMAT0001591 Oryza sativa miR439c 14 27
osa-miR439b MIMAT0001590 Oryza sativa miR439b 14 27
osa-miR439a MIMAT0001589 Oryza sativa miR439a 14 27
>mcmv-miR-m01-2-3p MIMAT0005535 Mouse cytomegalovirus
miR-m01-2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 cgttcgac 8
||||||||
Sbjct: 1 cgttcgac 8
>bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 cgttcga 7
|||||||
Sbjct: 2 cgttcga 8
>osa-miR439i MIMAT0001598 Oryza sativa miR439i
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttcgac 8
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439h MIMAT0001596 Oryza sativa miR439h
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttcgac 8
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439g MIMAT0001595 Oryza sativa miR439g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttcgac 8
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439f MIMAT0001594 Oryza sativa miR439f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttcgac 8
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439e MIMAT0001593 Oryza sativa miR439e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttcgac 8
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439d MIMAT0001592 Oryza sativa miR439d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttcgac 8
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439c MIMAT0001591 Oryza sativa miR439c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttcgac 8
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439b MIMAT0001590 Oryza sativa miR439b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttcgac 8
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439a MIMAT0001589 Oryza sativa miR439a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gttcgac 8
|||||||
Sbjct: 8 gttcgac 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 55
Number of extensions: 43
Number of successful extensions: 32
Number of sequences better than 100.0: 11
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
