BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcv-miR-199a*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9246c MIMAT0034863 Eptesicus fuscus miR-9246c 14 27
hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p 14 27
oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus miR-7422b-5p 14 27
mmu-miR-7081-3p MIMAT0028069 Mus musculus miR-7081-3p 14 27
mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p 14 27
mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p 14 27
mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p 14 27
hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p 14 27
hsa-miR-6810-3p MIMAT0027521 Homo sapiens miR-6810-3p 14 27
mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p 14 27
gma-miR408c-5p MIMAT0022993 Glycine max miR408c-5p 14 27
gma-miR408a-5p MIMAT0022992 Glycine max miR408a-5p 14 27
ame-miR-3718a MIMAT0018520 Apis mellifera miR-3718a 14 27
bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p 14 27
bta-miR-2343 MIMAT0011878 Bos taurus miR-2343 14 27
cbr-miR-56-5p MIMAT0011475 Caenorhabditis briggsae miR-56-5p 14 27
tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p 14 27
>efu-miR-9246c MIMAT0034863 Eptesicus fuscus miR-9246c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcccctg 8
|||||||
Sbjct: 1 tcccctg 7
>hbv-miR-B22-3p MIMAT0031773 Herpes B miR-B22-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcccct 7
|||||||
Sbjct: 8 ctcccct 2
>oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus
miR-7422b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcccct 7
|||||||
Sbjct: 7 ctcccct 1
>mmu-miR-7081-3p MIMAT0028069 Mus musculus miR-7081-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcccctg 8
|||||||
Sbjct: 2 tcccctg 8
>mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcccct 7
|||||||
Sbjct: 7 ctcccct 1
>mmu-miR-7072-5p MIMAT0028050 Mus musculus miR-7072-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcccct 7
|||||||
Sbjct: 8 ctcccct 2
>mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcccct 7
|||||||
Sbjct: 7 ctcccct 1
>hsa-miR-6826-3p MIMAT0027553 Homo sapiens miR-6826-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcccct 7
|||||||
Sbjct: 1 ctcccct 7
>hsa-miR-6810-3p MIMAT0027521 Homo sapiens miR-6810-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcccctg 8
|||||||
Sbjct: 1 tcccctg 7
>mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcccctg 8
|||||||
Sbjct: 8 tcccctg 2
>gma-miR408c-5p MIMAT0022993 Glycine max miR408c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcccctg 8
|||||||
Sbjct: 7 tcccctg 1
>gma-miR408a-5p MIMAT0022992 Glycine max miR408a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcccctg 8
|||||||
Sbjct: 7 tcccctg 1
>ame-miR-3718a MIMAT0018520 Apis mellifera miR-3718a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcccctg 8
|||||||
Sbjct: 1 tcccctg 7
>bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcccct 7
|||||||
Sbjct: 7 ctcccct 1
>bta-miR-2343 MIMAT0011878 Bos taurus miR-2343
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcccct 7
|||||||
Sbjct: 8 ctcccct 2
>cbr-miR-56-5p MIMAT0011475 Caenorhabditis briggsae miR-56-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcccctg 8
|||||||
Sbjct: 7 tcccctg 1
>tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcccct 7
|||||||
Sbjct: 7 ctcccct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 155
Number of extensions: 138
Number of successful extensions: 91
Number of sequences better than 100.0: 17
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
