BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h3*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-378-5p MIMAT0036193 Capra hircus miR-378-5p 16 6.9
cgr-miR-378-5p MIMAT0023943 Cricetulus griseus miR-378-5p 16 6.9
hsv1-miR-H3-5p MIMAT0015279 Herpes Simplex miR-H3-5p 16 6.9
rno-miR-378a-5p MIMAT0003378 Rattus norvegicus miR-378a-5p 16 6.9
mmu-miR-378a-5p MIMAT0000742 Mus musculus miR-378a-5p 16 6.9
hsa-miR-378a-5p MIMAT0000731 Homo sapiens miR-378a-5p 16 6.9
ata-miR1432-5p MIMAT0037214 Aegilops tauschii miR1432-5p 14 27
bdi-miR1432 MIMAT0035530 Brachypodium distachyon miR1432 14 27
efu-miR-9189a MIMAT0034888 Eptesicus fuscus miR-9189a 14 27
efu-miR-9203b MIMAT0034778 Eptesicus fuscus miR-9203b 14 27
atr-miR8602 MIMAT0033891 Amborella trichopoda miR8602 14 27
ssa-miR-8156-5p MIMAT0032734 Salmo salar miR-8156-5p 14 27
ptr-miR-3664 MIMAT0024063 Pan troglodytes miR-3664 14 27
aca-miR-5440 MIMAT0022062 Anolis carolinensis miR-5440 14 27
bfl-miR-4872c MIMAT0020116 Branchiostoma floridae miR-4872c 14 27
hsa-miR-3653-5p MIMAT0032110 Homo sapiens miR-3653-5p 14 27
cin-miR-4064-5p MIMAT0016616 Ciona intestinalis miR-4064-5p 14 27
ppy-miR-1200 MIMAT0016150 Pongo pygmaeus miR-1200 14 27
zma-miR1432-5p MIMAT0014032 Zea mays miR1432-5p 14 27
bmo-miR-2805 MIMAT0013713 Bombyx mori miR-2805 14 27
osa-miR2118o MIMAT0011754 Oryza sativa miR2118o 14 27
sbi-miR1432 MIMAT0011390 Sorghum bicolor miR1432 14 27
odi-miR-1474 MIMAT0006025 Oikopleura dioica miR-1474 14 27
osa-miR1432-5p MIMAT0005966 Oryza sativa miR1432-5p 14 27
hsa-miR-1200 MIMAT0005863 Homo sapiens miR-1200 14 27
>chi-miR-378-5p MIMAT0036193 Capra hircus miR-378-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctcctgac 8
||||||||
Sbjct: 1 ctcctgac 8
>cgr-miR-378-5p MIMAT0023943 Cricetulus griseus miR-378-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctcctgac 8
||||||||
Sbjct: 1 ctcctgac 8
>hsv1-miR-H3-5p MIMAT0015279 Herpes Simplex miR-H3-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctcctgac 8
||||||||
Sbjct: 1 ctcctgac 8
>rno-miR-378a-5p MIMAT0003378 Rattus norvegicus miR-378a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctcctgac 8
||||||||
Sbjct: 1 ctcctgac 8
>mmu-miR-378a-5p MIMAT0000742 Mus musculus miR-378a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctcctgac 8
||||||||
Sbjct: 1 ctcctgac 8
>hsa-miR-378a-5p MIMAT0000731 Homo sapiens miR-378a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ctcctgac 8
||||||||
Sbjct: 1 ctcctgac 8
>ata-miR1432-5p MIMAT0037214 Aegilops tauschii miR1432-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcctga 7
|||||||
Sbjct: 7 ctcctga 1
>bdi-miR1432 MIMAT0035530 Brachypodium distachyon miR1432
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcctga 7
|||||||
Sbjct: 8 ctcctga 2
>efu-miR-9189a MIMAT0034888 Eptesicus fuscus miR-9189a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcctgac 8
|||||||
Sbjct: 1 tcctgac 7
>efu-miR-9203b MIMAT0034778 Eptesicus fuscus miR-9203b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcctga 7
|||||||
Sbjct: 7 ctcctga 1
>atr-miR8602 MIMAT0033891 Amborella trichopoda miR8602
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcctga 7
|||||||
Sbjct: 7 ctcctga 1
>ssa-miR-8156-5p MIMAT0032734 Salmo salar miR-8156-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcctgac 8
|||||||
Sbjct: 2 tcctgac 8
>ptr-miR-3664 MIMAT0024063 Pan troglodytes miR-3664
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcctga 7
|||||||
Sbjct: 7 ctcctga 1
>aca-miR-5440 MIMAT0022062 Anolis carolinensis miR-5440
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcctga 7
|||||||
Sbjct: 7 ctcctga 1
>bfl-miR-4872c MIMAT0020116 Branchiostoma floridae miR-4872c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcctgac 8
|||||||
Sbjct: 8 tcctgac 2
>hsa-miR-3653-5p MIMAT0032110 Homo sapiens miR-3653-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcctga 7
|||||||
Sbjct: 2 ctcctga 8
>cin-miR-4064-5p MIMAT0016616 Ciona intestinalis miR-4064-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcctgac 8
|||||||
Sbjct: 8 tcctgac 2
>ppy-miR-1200 MIMAT0016150 Pongo pygmaeus miR-1200
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcctga 7
|||||||
Sbjct: 1 ctcctga 7
>zma-miR1432-5p MIMAT0014032 Zea mays miR1432-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcctga 7
|||||||
Sbjct: 8 ctcctga 2
>bmo-miR-2805 MIMAT0013713 Bombyx mori miR-2805
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcctgac 8
|||||||
Sbjct: 2 tcctgac 8
>osa-miR2118o MIMAT0011754 Oryza sativa miR2118o
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcctga 7
|||||||
Sbjct: 1 ctcctga 7
>sbi-miR1432 MIMAT0011390 Sorghum bicolor miR1432
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcctga 7
|||||||
Sbjct: 8 ctcctga 2
>odi-miR-1474 MIMAT0006025 Oikopleura dioica miR-1474
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcctgac 8
|||||||
Sbjct: 8 tcctgac 2
>osa-miR1432-5p MIMAT0005966 Oryza sativa miR1432-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ctcctga 7
|||||||
Sbjct: 8 ctcctga 2
>hsa-miR-1200 MIMAT0005863 Homo sapiens miR-1200
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ctcctga 7
|||||||
Sbjct: 1 ctcctga 7
Database: /home/users/abid
