BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-4*
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

nve-miR-9437 MIMAT0035398 Nematostella vectensis miR-9437              16   6.9  
rrv-miR-rR1-4-3p MIMAT0004411 Rhesus monkey miR-rR1-4-3p               16   6.9  
gma-miR4399 MIMAT0018315 Glycine max miR4399                           14      27
api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022                 14      27
dvi-miR-13b-5p MIMAT0032064 Drosophila virilis miR-13b-5p              14      27
dme-miR-13b-1-5p MIMAT0020796 Drosophila melanogaster miR-13b-1-5p     14      27
>nve-miR-9437 MIMAT0035398 Nematostella vectensis miR-9437
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 ctcgttaa 8
         ||||||||
Sbjct: 8 ctcgttaa 1
>rrv-miR-rR1-4-3p MIMAT0004411 Rhesus monkey miR-rR1-4-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 ctcgttaa 8
         ||||||||
Sbjct: 1 ctcgttaa 8
>gma-miR4399 MIMAT0018315 Glycine max miR4399
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcgttaa 8
         |||||||
Sbjct: 7 tcgttaa 1
>api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ctcgtta 7
         |||||||
Sbjct: 2 ctcgtta 8
>dvi-miR-13b-5p MIMAT0032064 Drosophila virilis miR-13b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcgttaa 8
         |||||||
Sbjct: 1 tcgttaa 7
>dme-miR-13b-1-5p MIMAT0020796 Drosophila melanogaster
         miR-13b-1-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcgttaa 8
         |||||||
Sbjct: 1 tcgttaa 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 49
Number of extensions: 41
Number of successful extensions: 28
Number of sequences better than 100.0: 6
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 6
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)