BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mcmv-miR-m23-2*
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bhv1-miR-B7 MIMAT0013969 Bovine herpesvirus miR-B7                     14      20
mcmv-miR-M23-2-5p MIMAT0005544 Mouse cytomegalovirus miR-M23-2-5p      14      20
sma-miR-8474-3p MIMAT0033670 Schistosoma mansoni miR-8474-3p           12      80
prd-miR-7966b-5p MIMAT0030834 Panagrellus redivivus miR-7966b-5p       12      80
bdi-miR7734-5p MIMAT0030202 Brachypodium distachyon miR7734-5p         12      80
mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p                  12      80
pma-miR-4610 MIMAT0019644 Petromyzon marinus miR-4610                  12      80
gma-miR1520j MIMAT0018263 Glycine max miR1520j                         12      80
gma-miR1520i MIMAT0018257 Glycine max miR1520i                         12      80
cin-miR-4181-3p MIMAT0016795 Ciona intestinalis miR-4181-3p            12      80
cqu-miR-1889-3p MIMAT0014441 Culex quinquefasciatus miR-1889-3p        12      80
aae-miR-1889-3p MIMAT0014234 Aedes aegypti miR-1889-3p                 12      80
crm-miR-52-3p MIMAT0011550 Caenorhabditis remanei miR-52-3p            12      80
mml-miR-519b MIMAT0006385 Macaca mulatta miR-519b                      12      80
mml-miR-424-3p MIMAT0026872 Macaca mulatta miR-424-3p                  12      80
mml-miR-302a-5p MIMAT0026851 Macaca mulatta miR-302a-5p                12      80
gga-miR-1798-5p MIMAT0007713 Gallus gallus miR-1798-5p                 12      80
cre-miR1148.1 MIMAT0005386 Chlamydomonas reinhardtii miR1148.1         12      80
cel-miR-52-3p MIMAT0020311 Caenorhabditis elegans miR-52-3p            12      80
>bhv1-miR-B7 MIMAT0013969 Bovine herpesvirus miR-B7
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gaacgtg 7
         |||||||
Sbjct: 7 gaacgtg 1
>mcmv-miR-M23-2-5p MIMAT0005544 Mouse cytomegalovirus
         miR-M23-2-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gaacgtg 7
         |||||||
Sbjct: 2 gaacgtg 8
>sma-miR-8474-3p MIMAT0033670 Schistosoma mansoni miR-8474-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gaacgt 6
         ||||||
Sbjct: 1 gaacgt 6
>prd-miR-7966b-5p MIMAT0030834 Panagrellus redivivus
         miR-7966b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 6 aacgtg 1
>bdi-miR7734-5p MIMAT0030202 Brachypodium distachyon miR7734-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gaacgt 6
         ||||||
Sbjct: 3 gaacgt 8
>mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 1 aacgtg 6
>pma-miR-4610 MIMAT0019644 Petromyzon marinus miR-4610
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 1 aacgtg 6
>gma-miR1520j MIMAT0018263 Glycine max miR1520j
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gaacgt 6
         ||||||
Sbjct: 3 gaacgt 8
>gma-miR1520i MIMAT0018257 Glycine max miR1520i
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 1 aacgtg 6
>cin-miR-4181-3p MIMAT0016795 Ciona intestinalis miR-4181-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gaacgt 6
         ||||||
Sbjct: 1 gaacgt 6
>cqu-miR-1889-3p MIMAT0014441 Culex quinquefasciatus miR-1889-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 6 aacgtg 1
>aae-miR-1889-3p MIMAT0014234 Aedes aegypti miR-1889-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 6 aacgtg 1
>crm-miR-52-3p MIMAT0011550 Caenorhabditis remanei miR-52-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 6 aacgtg 1
>mml-miR-519b MIMAT0006385 Macaca mulatta miR-519b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 1 aacgtg 6
>mml-miR-424-3p MIMAT0026872 Macaca mulatta miR-424-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 3 aacgtg 8
>mml-miR-302a-5p MIMAT0026851 Macaca mulatta miR-302a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 3 aacgtg 8
>gga-miR-1798-5p MIMAT0007713 Gallus gallus miR-1798-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 1 aacgtg 6
>cre-miR1148.1 MIMAT0005386 Chlamydomonas reinhardtii miR1148.1
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 3 aacgtg 8
>cel-miR-52-3p MIMAT0020311 Caenorhabditis elegans miR-52-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 aacgtg 7
         ||||||
Sbjct: 6 aacgtg 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 38
Number of extensions: 36
Number of successful extensions: 19
Number of sequences better than 100.0: 19
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 19
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)