BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m23-2*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bhv1-miR-B7 MIMAT0013969 Bovine herpesvirus miR-B7 14 20
mcmv-miR-M23-2-5p MIMAT0005544 Mouse cytomegalovirus miR-M23-2-5p 14 20
sma-miR-8474-3p MIMAT0033670 Schistosoma mansoni miR-8474-3p 12 80
prd-miR-7966b-5p MIMAT0030834 Panagrellus redivivus miR-7966b-5p 12 80
bdi-miR7734-5p MIMAT0030202 Brachypodium distachyon miR7734-5p 12 80
mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p 12 80
pma-miR-4610 MIMAT0019644 Petromyzon marinus miR-4610 12 80
gma-miR1520j MIMAT0018263 Glycine max miR1520j 12 80
gma-miR1520i MIMAT0018257 Glycine max miR1520i 12 80
cin-miR-4181-3p MIMAT0016795 Ciona intestinalis miR-4181-3p 12 80
cqu-miR-1889-3p MIMAT0014441 Culex quinquefasciatus miR-1889-3p 12 80
aae-miR-1889-3p MIMAT0014234 Aedes aegypti miR-1889-3p 12 80
crm-miR-52-3p MIMAT0011550 Caenorhabditis remanei miR-52-3p 12 80
mml-miR-519b MIMAT0006385 Macaca mulatta miR-519b 12 80
mml-miR-424-3p MIMAT0026872 Macaca mulatta miR-424-3p 12 80
mml-miR-302a-5p MIMAT0026851 Macaca mulatta miR-302a-5p 12 80
gga-miR-1798-5p MIMAT0007713 Gallus gallus miR-1798-5p 12 80
cre-miR1148.1 MIMAT0005386 Chlamydomonas reinhardtii miR1148.1 12 80
cel-miR-52-3p MIMAT0020311 Caenorhabditis elegans miR-52-3p 12 80
>bhv1-miR-B7 MIMAT0013969 Bovine herpesvirus miR-B7
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaacgtg 7
|||||||
Sbjct: 7 gaacgtg 1
>mcmv-miR-M23-2-5p MIMAT0005544 Mouse cytomegalovirus
miR-M23-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaacgtg 7
|||||||
Sbjct: 2 gaacgtg 8
>sma-miR-8474-3p MIMAT0033670 Schistosoma mansoni miR-8474-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaacgt 6
||||||
Sbjct: 1 gaacgt 6
>prd-miR-7966b-5p MIMAT0030834 Panagrellus redivivus
miR-7966b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtg 7
||||||
Sbjct: 6 aacgtg 1
>bdi-miR7734-5p MIMAT0030202 Brachypodium distachyon miR7734-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaacgt 6
||||||
Sbjct: 3 gaacgt 8
>mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtg 7
||||||
Sbjct: 1 aacgtg 6
>pma-miR-4610 MIMAT0019644 Petromyzon marinus miR-4610
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtg 7
||||||
Sbjct: 1 aacgtg 6
>gma-miR1520j MIMAT0018263 Glycine max miR1520j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaacgt 6
||||||
Sbjct: 3 gaacgt 8
>gma-miR1520i MIMAT0018257 Glycine max miR1520i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtg 7
||||||
Sbjct: 1 aacgtg 6
>cin-miR-4181-3p MIMAT0016795 Ciona intestinalis miR-4181-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gaacgt 6
||||||
Sbjct: 1 gaacgt 6
>cqu-miR-1889-3p MIMAT0014441 Culex quinquefasciatus miR-1889-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtg 7
||||||
Sbjct: 6 aacgtg 1
>aae-miR-1889-3p MIMAT0014234 Aedes aegypti miR-1889-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtg 7
||||||
Sbjct: 6 aacgtg 1
>crm-miR-52-3p MIMAT0011550 Caenorhabditis remanei miR-52-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtg 7
||||||
Sbjct: 6 aacgtg 1
>mml-miR-519b MIMAT0006385 Macaca mulatta miR-519b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtg 7
||||||
Sbjct: 1 aacgtg 6
>mml-miR-424-3p MIMAT0026872 Macaca mulatta miR-424-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtg 7
||||||
Sbjct: 3 aacgtg 8
>mml-miR-302a-5p MIMAT0026851 Macaca mulatta miR-302a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtg 7
||||||
Sbjct: 3 aacgtg 8
>gga-miR-1798-5p MIMAT0007713 Gallus gallus miR-1798-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtg 7
||||||
Sbjct: 1 aacgtg 6
>cre-miR1148.1 MIMAT0005386 Chlamydomonas reinhardtii miR1148.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aacgtg 7
||||||
Sbjct: 3 aacgtg 8
>cel-miR-52-3p MIMAT0020311 Caenorhabditis elegans miR-52-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aacgtg 7
||||||
Sbjct: 6 aacgtg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 38
Number of extensions: 36
Number of successful extensions: 19
Number of sequences better than 100.0: 19
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 19
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)