BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-9-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-9771p MIMAT0036619 Tupaia chinensis miR-9771p 14 27
gra-miR8643b MIMAT0034000 Gossypium raimondii miR8643b 14 27
gra-miR8643a MIMAT0033999 Gossypium raimondii miR8643a 14 27
ppc-miR-84d-3p MIMAT0032921 Pristionchus pacificus miR-84d-3p 14 27
bdi-miR7748a-3p MIMAT0030237 Brachypodium distachyon miR7748a-3p 14 27
osa-miR7694-3p MIMAT0029960 Oryza sativa miR7694-3p 14 27
mml-miR-7199-5p MIMAT0028362 Macaca mulatta miR-7199-5p 14 27
hsa-miR-5583-3p MIMAT0022282 Homo sapiens miR-5583-3p 14 27
gma-miR4402 MIMAT0018320 Glycine max miR4402 14 27
tca-miR-3808-5p MIMAT0018638 Tribolium castaneum miR-3808-5p 14 27
osa-miR2099-5p MIMAT0010062 Oryza sativa miR2099-5p 14 27
>tch-miR-9771p MIMAT0036619 Tupaia chinensis miR-9771p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatatgt 8
|||||||
Sbjct: 1 aatatgt 7
>gra-miR8643b MIMAT0034000 Gossypium raimondii miR8643b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatatgt 8
|||||||
Sbjct: 7 aatatgt 1
>gra-miR8643a MIMAT0033999 Gossypium raimondii miR8643a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatatgt 8
|||||||
Sbjct: 7 aatatgt 1
>ppc-miR-84d-3p MIMAT0032921 Pristionchus pacificus miR-84d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaatatg 7
|||||||
Sbjct: 8 gaatatg 2
>bdi-miR7748a-3p MIMAT0030237 Brachypodium distachyon
miR7748a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatatgt 8
|||||||
Sbjct: 1 aatatgt 7
>osa-miR7694-3p MIMAT0029960 Oryza sativa miR7694-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaatatg 7
|||||||
Sbjct: 8 gaatatg 2
>mml-miR-7199-5p MIMAT0028362 Macaca mulatta miR-7199-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatatgt 8
|||||||
Sbjct: 2 aatatgt 8
>hsa-miR-5583-3p MIMAT0022282 Homo sapiens miR-5583-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaatatg 7
|||||||
Sbjct: 1 gaatatg 7
>gma-miR4402 MIMAT0018320 Glycine max miR4402
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatatgt 8
|||||||
Sbjct: 7 aatatgt 1
>tca-miR-3808-5p MIMAT0018638 Tribolium castaneum miR-3808-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gaatatg 7
|||||||
Sbjct: 8 gaatatg 2
>osa-miR2099-5p MIMAT0010062 Oryza sativa miR2099-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gaatatg 7
|||||||
Sbjct: 2 gaatatg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 190
Number of extensions: 179
Number of successful extensions: 158
Number of sequences better than 100.0: 11
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
