BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m15*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p 16 6.9
esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p 16 6.9
esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p 16 6.9
esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p 16 6.9
esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p 16 6.9
mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p 16 6.9
hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p 16 6.9
atr-miR2950 MIMAT0033951 Amborella trichopoda miR2950 14 27
bdi-miR7757-5p.2 MIMAT0030259 Brachypodium distachyon miR7757-5p.2 14 27
lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b 14 27
lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a 14 27
mes-miR2950 MIMAT0029309 Manihot esculenta miR2950 14 27
gga-miR-7468-3p MIMAT0029091 Gallus gallus miR-7468-3p 14 27
mdm-miR482d MIMAT0026039 Malus domestica miR482d 14 27
mmu-miR-7093-3p MIMAT0028093 Mus musculus miR-7093-3p 14 27
mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p 14 27
mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p 14 27
gma-miR5671a MIMAT0022453 Glycine max miR5671a 14 27
vvi-miR2950-5p MIMAT0018009 Vitis vinifera miR2950-5p 14 27
hsv2-miR-H6-5p MIMAT0015651 Herpes Simplex miR-H6-5p 14 27
mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p 14 27
pvu-miR159a.2 MIMAT0011170 Phaseolus vulgaris miR159a.2 14 27
osa-miR2095-3p MIMAT0010055 Oryza sativa miR2095-3p 14 27
ath-miR447a.2-3p MIMAT0020345 Arabidopsis thaliana miR447a.2-3p 14 27
cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p 14 27
>esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gatggaag 8
||||||||
Sbjct: 8 gatggaag 1
>esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gatggaag 8
||||||||
Sbjct: 8 gatggaag 1
>esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gatggaag 8
||||||||
Sbjct: 8 gatggaag 1
>esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gatggaag 8
||||||||
Sbjct: 8 gatggaag 1
>esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 gatggaag 8
||||||||
Sbjct: 8 gatggaag 1
>mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gatggaag 8
||||||||
Sbjct: 1 gatggaag 8
>hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gatggaag 8
||||||||
Sbjct: 1 gatggaag 8
>atr-miR2950 MIMAT0033951 Amborella trichopoda miR2950
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggaa 7
|||||||
Sbjct: 7 gatggaa 1
>bdi-miR7757-5p.2 MIMAT0030259 Brachypodium distachyon
miR7757-5p.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggaag 8
|||||||
Sbjct: 7 atggaag 1
>lja-miR1507b MIMAT0029331 Lotus japonicus miR1507b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggaag 8
|||||||
Sbjct: 8 atggaag 2
>lja-miR1507a MIMAT0029330 Lotus japonicus miR1507a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggaag 8
|||||||
Sbjct: 8 atggaag 2
>mes-miR2950 MIMAT0029309 Manihot esculenta miR2950
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggaa 7
|||||||
Sbjct: 7 gatggaa 1
>gga-miR-7468-3p MIMAT0029091 Gallus gallus miR-7468-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatggaa 7
|||||||
Sbjct: 2 gatggaa 8
>mdm-miR482d MIMAT0026039 Malus domestica miR482d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggaag 8
|||||||
Sbjct: 2 atggaag 8
>mmu-miR-7093-3p MIMAT0028093 Mus musculus miR-7093-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggaa 7
|||||||
Sbjct: 8 gatggaa 2
>mmu-miR-7077-3p MIMAT0028061 Mus musculus miR-7077-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggaag 8
|||||||
Sbjct: 8 atggaag 2
>mmu-miR-7048-3p MIMAT0028001 Mus musculus miR-7048-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggaag 8
|||||||
Sbjct: 8 atggaag 2
>gma-miR5671a MIMAT0022453 Glycine max miR5671a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggaag 8
|||||||
Sbjct: 2 atggaag 8
>vvi-miR2950-5p MIMAT0018009 Vitis vinifera miR2950-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggaa 7
|||||||
Sbjct: 7 gatggaa 1
>hsv2-miR-H6-5p MIMAT0015651 Herpes Simplex miR-H6-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggaag 8
|||||||
Sbjct: 2 atggaag 8
>mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatggaa 7
|||||||
Sbjct: 8 gatggaa 2
>pvu-miR159a.2 MIMAT0011170 Phaseolus vulgaris miR159a.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggaag 8
|||||||
Sbjct: 7 atggaag 1
>osa-miR2095-3p MIMAT0010055 Oryza sativa miR2095-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 atggaag 8
|||||||
Sbjct: 7 atggaag 1
>ath-miR447a.2-3p MIMAT0020345 Arabidopsis thaliana miR447a.2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggaag 8
|||||||
Sbjct: 2 atggaag 8
>cel-miR-51-3p MIMAT0015099 Caenorhabditis elegans miR-51-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 atggaag 8
|||||||
Sbjct: 2 atggaag 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 286
Number of extensions: 254
Number of successful extensions: 214
Number of sequences better than 100.0: 25
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 25
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
