BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-6*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cte-miR-1995 MIMAT0009706 Capitella teleta miR-1995 14 20
rrv-miR-rR1-6-3p MIMAT0004414 Rhesus monkey miR-rR1-6-3p 14 20
oha-miR-1c-5p MIMAT0036801 Ophiophagus hannah miR-1c-5p 12 80
chi-miR-493-5p MIMAT0036253 Capra hircus miR-493-5p 12 80
gsa-miR-184c-3p MIMAT0035325 Gyrodactylus salaris miR-184c-3p 12 80
efu-miR-493 MIMAT0034929 Eptesicus fuscus miR-493 12 80
gra-miR8695 MIMAT0034076 Gossypium raimondii miR8695 12 80
atr-miR8579 MIMAT0033863 Amborella trichopoda miR8579 12 80
stu-miR8041b-3p MIMAT0030955 Solanum tuberosum miR8041b-3p 12 80
stu-miR8041a-3p MIMAT0030954 Solanum tuberosum miR8041a-3p 12 80
stu-miR7979 MIMAT0030846 Solanum tuberosum miR7979 12 80
bdi-miR7784b-5p MIMAT0030324 Brachypodium distachyon miR7784b-5p 12 80
bdi-miR7784a-5p MIMAT0030322 Brachypodium distachyon miR7784a-5p 12 80
sbi-miR6232a-3p MIMAT0026445 Sorghum bicolor miR6232a-3p 12 80
ssc-miR-493-5p MIMAT0025377 Sus scrofa miR-493-5p 12 80
hme-miR-3338 MIMAT0024982 Heliconius melpomene miR-3338 12 80
ppe-miR6297b MIMAT0027336 Prunus persica miR6297b 12 80
mse-miR-3338 MIMAT0024432 Manduca sexta miR-3338 12 80
ggo-miR-493 MIMAT0024249 Gorilla gorilla miR-493 12 80
ola-miR-33 MIMAT0022576 Oryzias latipes miR-33 12 80
bra-miR1885b MIMAT0023015 Brassica rapa miR1885b 12 80
cin-miR-5612-3p MIMAT0022352 Ciona intestinalis miR-5612-3p 12 80
oar-miR-493-5p MIMAT0019237 Ovis aries miR-493-5p 12 80
tca-miR-3851a-3p MIMAT0018759 Tribolium castaneum miR-3851a-3p 12 80
cin-miR-4031-3p MIMAT0016552 Ciona intestinalis miR-4031-3p 12 80
esi-miR3450-5p MIMAT0017757 Ectocarpus siliculosus miR3450-5p 12 80
bmo-miR-3347b MIMAT0015608 Bombyx mori miR-3347b 12 80
bmo-miR-3347a MIMAT0015533 Bombyx mori miR-3347a 12 80
bmo-miR-3338-3p MIMAT0015526 Bombyx mori miR-3338-3p 12 80
bta-miR-1434-5p MIMAT0012039 Bos taurus miR-1434-5p 12 80
mml-miR-493-5p MIMAT0026884 Macaca mulatta miR-493-5p 12 80
gga-miR-1397-3p MIMAT0007284 Gallus gallus miR-1397-3p 12 80
mmu-miR-493-5p MIMAT0017276 Mus musculus miR-493-5p 12 80
rno-miR-493-5p MIMAT0017217 Rattus norvegicus miR-493-5p 12 80
hsa-miR-493-5p MIMAT0002813 Homo sapiens miR-493-5p 12 80
>cte-miR-1995 MIMAT0009706 Capitella teleta miR-1995
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gatgtac 7
|||||||
Sbjct: 7 gatgtac 1
>rrv-miR-rR1-6-3p MIMAT0004414 Rhesus monkey miR-rR1-6-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gatgtac 7
|||||||
Sbjct: 2 gatgtac 8
>oha-miR-1c-5p MIMAT0036801 Ophiophagus hannah miR-1c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 6 atgtac 1
>chi-miR-493-5p MIMAT0036253 Capra hircus miR-493-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>gsa-miR-184c-3p MIMAT0035325 Gyrodactylus salaris miR-184c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgta 6
||||||
Sbjct: 1 gatgta 6
>efu-miR-493 MIMAT0034929 Eptesicus fuscus miR-493
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>gra-miR8695 MIMAT0034076 Gossypium raimondii miR8695
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgta 6
||||||
Sbjct: 3 gatgta 8
>atr-miR8579 MIMAT0033863 Amborella trichopoda miR8579
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgta 6
||||||
Sbjct: 3 gatgta 8
>stu-miR8041b-3p MIMAT0030955 Solanum tuberosum miR8041b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgta 6
||||||
Sbjct: 3 gatgta 8
>stu-miR8041a-3p MIMAT0030954 Solanum tuberosum miR8041a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgta 6
||||||
Sbjct: 3 gatgta 8
>stu-miR7979 MIMAT0030846 Solanum tuberosum miR7979
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>bdi-miR7784b-5p MIMAT0030324 Brachypodium distachyon
miR7784b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 6 atgtac 1
>bdi-miR7784a-5p MIMAT0030322 Brachypodium distachyon
miR7784a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 6 atgtac 1
>sbi-miR6232a-3p MIMAT0026445 Sorghum bicolor miR6232a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgta 6
||||||
Sbjct: 3 gatgta 8
>ssc-miR-493-5p MIMAT0025377 Sus scrofa miR-493-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>hme-miR-3338 MIMAT0024982 Heliconius melpomene miR-3338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgtac 7
||||||
Sbjct: 1 atgtac 6
>ppe-miR6297b MIMAT0027336 Prunus persica miR6297b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgta 6
||||||
Sbjct: 1 gatgta 6
>mse-miR-3338 MIMAT0024432 Manduca sexta miR-3338
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgtac 7
||||||
Sbjct: 1 atgtac 6
>ggo-miR-493 MIMAT0024249 Gorilla gorilla miR-493
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>ola-miR-33 MIMAT0022576 Oryzias latipes miR-33
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgtac 7
||||||
Sbjct: 3 atgtac 8
>bra-miR1885b MIMAT0023015 Brassica rapa miR1885b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgta 6
||||||
Sbjct: 6 gatgta 1
>cin-miR-5612-3p MIMAT0022352 Ciona intestinalis miR-5612-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgta 6
||||||
Sbjct: 8 gatgta 3
>oar-miR-493-5p MIMAT0019237 Ovis aries miR-493-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>tca-miR-3851a-3p MIMAT0018759 Tribolium castaneum miR-3851a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>cin-miR-4031-3p MIMAT0016552 Ciona intestinalis miR-4031-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgtac 7
||||||
Sbjct: 3 atgtac 8
>esi-miR3450-5p MIMAT0017757 Ectocarpus siliculosus miR3450-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgta 6
||||||
Sbjct: 6 gatgta 1
>bmo-miR-3347b MIMAT0015608 Bombyx mori miR-3347b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgta 6
||||||
Sbjct: 6 gatgta 1
>bmo-miR-3347a MIMAT0015533 Bombyx mori miR-3347a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gatgta 6
||||||
Sbjct: 6 gatgta 1
>bmo-miR-3338-3p MIMAT0015526 Bombyx mori miR-3338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 atgtac 7
||||||
Sbjct: 1 atgtac 6
>bta-miR-1434-5p MIMAT0012039 Bos taurus miR-1434-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 6 atgtac 1
>mml-miR-493-5p MIMAT0026884 Macaca mulatta miR-493-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>gga-miR-1397-3p MIMAT0007284 Gallus gallus miR-1397-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gatgta 6
||||||
Sbjct: 1 gatgta 6
>mmu-miR-493-5p MIMAT0017276 Mus musculus miR-493-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>rno-miR-493-5p MIMAT0017217 Rattus norvegicus miR-493-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
>hsa-miR-493-5p MIMAT0002813 Homo sapiens miR-493-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 atgtac 7
||||||
Sbjct: 8 atgtac 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 51
Number of extensions: 49
Number of successful extensions: 35
Number of sequences better than 100.0: 35
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 35
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
