BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= kshv-miR-k12-1*
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ata-miR172b-5p MIMAT0037148 Aegilops tauschii miR172b-5p               16   6.9  
stu-miR172b-5p MIMAT0031286 Solanum tuberosum miR172b-5p               16   6.9  
gma-miR172g MIMAT0021656 Glycine max miR172g                           16   6.9  
bdi-miR172a-5p MIMAT0027061 Brachypodium distachyon miR172a-5p         16   6.9  
aly-miR172e-5p MIMAT0017529 Arabidopsis lyrata miR172e-5p              16   6.9  
aly-miR172b-5p MIMAT0017523 Arabidopsis lyrata miR172b-5p              16   6.9  
bra-miR172b-5p MIMAT0010167 Brassica rapa miR172b-5p                   16   6.9  
kshv-miR-K12-1-3p MIMAT0015214 Kaposi sarcoma-associated miR-K12...    16   6.9  
osa-miR172d-5p MIMAT0022885 Oryza sativa miR172d-5p                    16   6.9  
ath-miR172e-5p MIMAT0031918 Arabidopsis thaliana miR172e-5p            16   6.9  
ath-miR172b-5p MIMAT0000204 Arabidopsis thaliana miR172b-5p            16   6.9  
chi-miR-497-5p MIMAT0036259 Capra hircus miR-497-5p                    14      27
eca-miR-3065 MIMAT0034658 Equus caballus miR-3065                      14      27
ath-miR8168 MIMAT0032766 Arabidopsis thaliana miR8168                  14      27
mdo-miR-15c-5p MIMAT0028768 Monodelphis domestica miR-15c-5p           14      27
ccr-miR-457b MIMAT0026303 Cyprinus carpio miR-457b                     14      27
ccr-miR-457a MIMAT0026302 Cyprinus carpio miR-457a                     14      27
hsa-miR-6871-3p MIMAT0027643 Homo sapiens miR-6871-3p                  14      27
rno-miR-3065-3p MIMAT0017840 Rattus norvegicus miR-3065-3p             14      27
hsa-miR-3065-3p MIMAT0015378 Homo sapiens miR-3065-3p                  14      27
mmu-miR-3065-3p MIMAT0014837 Mus musculus miR-3065-3p                  14      27
rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p               14      27
cre-miR1153-5p.2 MIMAT0005399 Chlamydomonas reinhardtii miR1153-...    14      27
smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107            14      27
mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p                    14      27
zma-miR172c-5p MIMAT0015158 Zea mays miR172c-5p                        14      27
zma-miR172b-5p MIMAT0015157 Zea mays miR172b-5p                        14      27
zma-miR172d-5p MIMAT0015156 Zea mays miR172d-5p                        14      27
>ata-miR172b-5p MIMAT0037148 Aegilops tauschii miR172b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>stu-miR172b-5p MIMAT0031286 Solanum tuberosum miR172b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>gma-miR172g MIMAT0021656 Glycine max miR172g
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>bdi-miR172a-5p MIMAT0027061 Brachypodium distachyon miR172a-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>aly-miR172e-5p MIMAT0017529 Arabidopsis lyrata miR172e-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>aly-miR172b-5p MIMAT0017523 Arabidopsis lyrata miR172b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>bra-miR172b-5p MIMAT0010167 Brassica rapa miR172b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>kshv-miR-K12-1-3p MIMAT0015214 Kaposi sarcoma-associated
         miR-K12-1-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>osa-miR172d-5p MIMAT0022885 Oryza sativa miR172d-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>ath-miR172e-5p MIMAT0031918 Arabidopsis thaliana miR172e-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>ath-miR172b-5p MIMAT0000204 Arabidopsis thaliana miR172b-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gcagcacc 8
         ||||||||
Sbjct: 1 gcagcacc 8
>chi-miR-497-5p MIMAT0036259 Capra hircus miR-497-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcagcac 7
         |||||||
Sbjct: 2 gcagcac 8
>eca-miR-3065 MIMAT0034658 Equus caballus miR-3065
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 2 cagcacc 8
>ath-miR8168 MIMAT0032766 Arabidopsis thaliana miR8168
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 8 cagcacc 2
>mdo-miR-15c-5p MIMAT0028768 Monodelphis domestica miR-15c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcagcac 7
         |||||||
Sbjct: 2 gcagcac 8
>ccr-miR-457b MIMAT0026303 Cyprinus carpio miR-457b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcagcac 7
         |||||||
Sbjct: 2 gcagcac 8
>ccr-miR-457a MIMAT0026302 Cyprinus carpio miR-457a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gcagcac 7
         |||||||
Sbjct: 2 gcagcac 8
>hsa-miR-6871-3p MIMAT0027643 Homo sapiens miR-6871-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 1 cagcacc 7
>rno-miR-3065-3p MIMAT0017840 Rattus norvegicus miR-3065-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 2 cagcacc 8
>hsa-miR-3065-3p MIMAT0015378 Homo sapiens miR-3065-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 2 cagcacc 8
>mmu-miR-3065-3p MIMAT0014837 Mus musculus miR-3065-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 2 cagcacc 8
>rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 8 cagcacc 2
>cre-miR1153-5p.2 MIMAT0005399 Chlamydomonas reinhardtii
         miR1153-5p.2
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gcagcac 7
         |||||||
Sbjct: 8 gcagcac 2
>smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 7 cagcacc 1
>mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 8 cagcacc 2
>zma-miR172c-5p MIMAT0015158 Zea mays miR172c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 1 cagcacc 7
>zma-miR172b-5p MIMAT0015157 Zea mays miR172b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 1 cagcacc 7
>zma-miR172d-5p MIMAT0015156 Zea mays miR172d-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 cagcacc 8
         |||||||
Sbjct: 1 cagcacc 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 650
Number of extensions: 611
Number of successful extensions: 350
Number of sequences better than 100.0: 28
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)