BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-1*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR172b-5p MIMAT0037148 Aegilops tauschii miR172b-5p 16 6.9
stu-miR172b-5p MIMAT0031286 Solanum tuberosum miR172b-5p 16 6.9
gma-miR172g MIMAT0021656 Glycine max miR172g 16 6.9
bdi-miR172a-5p MIMAT0027061 Brachypodium distachyon miR172a-5p 16 6.9
aly-miR172e-5p MIMAT0017529 Arabidopsis lyrata miR172e-5p 16 6.9
aly-miR172b-5p MIMAT0017523 Arabidopsis lyrata miR172b-5p 16 6.9
bra-miR172b-5p MIMAT0010167 Brassica rapa miR172b-5p 16 6.9
kshv-miR-K12-1-3p MIMAT0015214 Kaposi sarcoma-associated miR-K12... 16 6.9
osa-miR172d-5p MIMAT0022885 Oryza sativa miR172d-5p 16 6.9
ath-miR172e-5p MIMAT0031918 Arabidopsis thaliana miR172e-5p 16 6.9
ath-miR172b-5p MIMAT0000204 Arabidopsis thaliana miR172b-5p 16 6.9
chi-miR-497-5p MIMAT0036259 Capra hircus miR-497-5p 14 27
eca-miR-3065 MIMAT0034658 Equus caballus miR-3065 14 27
ath-miR8168 MIMAT0032766 Arabidopsis thaliana miR8168 14 27
mdo-miR-15c-5p MIMAT0028768 Monodelphis domestica miR-15c-5p 14 27
ccr-miR-457b MIMAT0026303 Cyprinus carpio miR-457b 14 27
ccr-miR-457a MIMAT0026302 Cyprinus carpio miR-457a 14 27
hsa-miR-6871-3p MIMAT0027643 Homo sapiens miR-6871-3p 14 27
rno-miR-3065-3p MIMAT0017840 Rattus norvegicus miR-3065-3p 14 27
hsa-miR-3065-3p MIMAT0015378 Homo sapiens miR-3065-3p 14 27
mmu-miR-3065-3p MIMAT0014837 Mus musculus miR-3065-3p 14 27
rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p 14 27
cre-miR1153-5p.2 MIMAT0005399 Chlamydomonas reinhardtii miR1153-... 14 27
smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107 14 27
mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p 14 27
zma-miR172c-5p MIMAT0015158 Zea mays miR172c-5p 14 27
zma-miR172b-5p MIMAT0015157 Zea mays miR172b-5p 14 27
zma-miR172d-5p MIMAT0015156 Zea mays miR172d-5p 14 27
>ata-miR172b-5p MIMAT0037148 Aegilops tauschii miR172b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>stu-miR172b-5p MIMAT0031286 Solanum tuberosum miR172b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>gma-miR172g MIMAT0021656 Glycine max miR172g
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>bdi-miR172a-5p MIMAT0027061 Brachypodium distachyon miR172a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>aly-miR172e-5p MIMAT0017529 Arabidopsis lyrata miR172e-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>aly-miR172b-5p MIMAT0017523 Arabidopsis lyrata miR172b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>bra-miR172b-5p MIMAT0010167 Brassica rapa miR172b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>kshv-miR-K12-1-3p MIMAT0015214 Kaposi sarcoma-associated
miR-K12-1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>osa-miR172d-5p MIMAT0022885 Oryza sativa miR172d-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>ath-miR172e-5p MIMAT0031918 Arabidopsis thaliana miR172e-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>ath-miR172b-5p MIMAT0000204 Arabidopsis thaliana miR172b-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gcagcacc 8
||||||||
Sbjct: 1 gcagcacc 8
>chi-miR-497-5p MIMAT0036259 Capra hircus miR-497-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcagcac 7
|||||||
Sbjct: 2 gcagcac 8
>eca-miR-3065 MIMAT0034658 Equus caballus miR-3065
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagcacc 8
|||||||
Sbjct: 2 cagcacc 8
>ath-miR8168 MIMAT0032766 Arabidopsis thaliana miR8168
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagcacc 8
|||||||
Sbjct: 8 cagcacc 2
>mdo-miR-15c-5p MIMAT0028768 Monodelphis domestica miR-15c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcagcac 7
|||||||
Sbjct: 2 gcagcac 8
>ccr-miR-457b MIMAT0026303 Cyprinus carpio miR-457b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcagcac 7
|||||||
Sbjct: 2 gcagcac 8
>ccr-miR-457a MIMAT0026302 Cyprinus carpio miR-457a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcagcac 7
|||||||
Sbjct: 2 gcagcac 8
>hsa-miR-6871-3p MIMAT0027643 Homo sapiens miR-6871-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagcacc 8
|||||||
Sbjct: 1 cagcacc 7
>rno-miR-3065-3p MIMAT0017840 Rattus norvegicus miR-3065-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagcacc 8
|||||||
Sbjct: 2 cagcacc 8
>hsa-miR-3065-3p MIMAT0015378 Homo sapiens miR-3065-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagcacc 8
|||||||
Sbjct: 2 cagcacc 8
>mmu-miR-3065-3p MIMAT0014837 Mus musculus miR-3065-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagcacc 8
|||||||
Sbjct: 2 cagcacc 8
>rno-miR-667-5p MIMAT0017369 Rattus norvegicus miR-667-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagcacc 8
|||||||
Sbjct: 8 cagcacc 2
>cre-miR1153-5p.2 MIMAT0005399 Chlamydomonas reinhardtii
miR1153-5p.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcagcac 7
|||||||
Sbjct: 8 gcagcac 2
>smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagcacc 8
|||||||
Sbjct: 7 cagcacc 1
>mmu-miR-667-5p MIMAT0017239 Mus musculus miR-667-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cagcacc 8
|||||||
Sbjct: 8 cagcacc 2
>zma-miR172c-5p MIMAT0015158 Zea mays miR172c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagcacc 8
|||||||
Sbjct: 1 cagcacc 7
>zma-miR172b-5p MIMAT0015157 Zea mays miR172b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagcacc 8
|||||||
Sbjct: 1 cagcacc 7
>zma-miR172d-5p MIMAT0015156 Zea mays miR172d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cagcacc 8
|||||||
Sbjct: 1 cagcacc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 650
Number of extensions: 611
Number of successful extensions: 350
Number of sequences better than 100.0: 28
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)