BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ebv-miR-bart10*
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

efu-miR-9186o MIMAT0035091 Eptesicus fuscus miR-9186o                  16   6.9  
efu-miR-9186q MIMAT0034959 Eptesicus fuscus miR-9186q                  16   6.9  
ebv-miR-BART10-5p MIMAT0004817 Epstein Barr miR-BART10-5p              16   6.9  
tch-miR-1306-5p MIMAT0036496 Tupaia chinensis miR-1306-5p              14      27
chi-miR-1306-5p MIMAT0035939 Capra hircus miR-1306-5p                  14      27
mdo-miR-7372-3p MIMAT0028777 Monodelphis domestica miR-7372-3p         14      27
mml-miR-1306-5p MIMAT0028240 Macaca mulatta miR-1306-5p                14      27
dre-miR-1306 MIMAT0028210 Danio rerio miR-1306                         14      27
mmu-miR-7037-5p MIMAT0027978 Mus musculus miR-7037-5p                  14      27
hsa-miR-6865-5p MIMAT0027630 Homo sapiens miR-6865-5p                  14      27
hsa-miR-6815-5p MIMAT0027530 Homo sapiens miR-6815-5p                  14      27
rno-miR-1306-5p MIMAT0024851 Rattus norvegicus miR-1306-5p             14      27
hsa-miR-6134 MIMAT0024618 Homo sapiens miR-6134                        14      27
ptr-miR-6134 MIMAT0024609 Pan troglodytes miR-6134                     14      27
cgr-miR-1306-5p MIMAT0023752 Cricetulus griseus miR-1306-5p            14      27
ola-miR-1306 MIMAT0022590 Oryzias latipes miR-1306                     14      27
sko-miR-4835-5p MIMAT0020051 Saccoglossus kowalevskii miR-4835-5p      14      27
ssc-miR-1306-5p MIMAT0013937 Sus scrofa miR-1306-5p                    14      27
bta-miR-1306 MIMAT0009974 Bos taurus miR-1306                          14      27
mmu-miR-1968-3p MIMAT0017350 Mus musculus miR-1968-3p                  14      27
cfa-miR-1306 MIMAT0006661 Canis familiaris miR-1306                    14      27
mdo-miR-1546-3p MIMAT0026770 Monodelphis domestica miR-1546-3p         14      27
gga-miR-1306-5p MIMAT0026763 Gallus gallus miR-1306-5p                 14      27
oan-miR-1421u-5p MIMAT0007088 Ornithorhynchus anatinus miR-1421u-5p    14      27
hsa-miR-1306-5p MIMAT0022726 Homo sapiens miR-1306-5p                  14      27
>efu-miR-9186o MIMAT0035091 Eptesicus fuscus miR-9186o
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gccacctc 8
         ||||||||
Sbjct: 8 gccacctc 1
>efu-miR-9186q MIMAT0034959 Eptesicus fuscus miR-9186q
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gccacctc 8
         ||||||||
Sbjct: 8 gccacctc 1
>ebv-miR-BART10-5p MIMAT0004817 Epstein Barr miR-BART10-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gccacctc 8
         ||||||||
Sbjct: 1 gccacctc 8
>tch-miR-1306-5p MIMAT0036496 Tupaia chinensis miR-1306-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>chi-miR-1306-5p MIMAT0035939 Capra hircus miR-1306-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>mdo-miR-7372-3p MIMAT0028777 Monodelphis domestica miR-7372-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 2 ccacctc 8
>mml-miR-1306-5p MIMAT0028240 Macaca mulatta miR-1306-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>dre-miR-1306 MIMAT0028210 Danio rerio miR-1306
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>mmu-miR-7037-5p MIMAT0027978 Mus musculus miR-7037-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gccacct 7
         |||||||
Sbjct: 8 gccacct 2
>hsa-miR-6865-5p MIMAT0027630 Homo sapiens miR-6865-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gccacct 7
         |||||||
Sbjct: 8 gccacct 2
>hsa-miR-6815-5p MIMAT0027530 Homo sapiens miR-6815-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gccacct 7
         |||||||
Sbjct: 8 gccacct 2
>rno-miR-1306-5p MIMAT0024851 Rattus norvegicus miR-1306-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>hsa-miR-6134 MIMAT0024618 Homo sapiens miR-6134
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 8 ccacctc 2
>ptr-miR-6134 MIMAT0024609 Pan troglodytes miR-6134
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 8 ccacctc 2
>cgr-miR-1306-5p MIMAT0023752 Cricetulus griseus miR-1306-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>ola-miR-1306 MIMAT0022590 Oryzias latipes miR-1306
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>sko-miR-4835-5p MIMAT0020051 Saccoglossus kowalevskii
         miR-4835-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gccacct 7
         |||||||
Sbjct: 7 gccacct 1
>ssc-miR-1306-5p MIMAT0013937 Sus scrofa miR-1306-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>bta-miR-1306 MIMAT0009974 Bos taurus miR-1306
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>mmu-miR-1968-3p MIMAT0017350 Mus musculus miR-1968-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 2 ccacctc 8
>cfa-miR-1306 MIMAT0006661 Canis familiaris miR-1306
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>mdo-miR-1546-3p MIMAT0026770 Monodelphis domestica miR-1546-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
>gga-miR-1306-5p MIMAT0026763 Gallus gallus miR-1306-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 2 ccacctc 8
>oan-miR-1421u-5p MIMAT0007088 Ornithorhynchus anatinus
         miR-1421u-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gccacct 7
         |||||||
Sbjct: 7 gccacct 1
>hsa-miR-1306-5p MIMAT0022726 Homo sapiens miR-1306-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ccacctc 8
         |||||||
Sbjct: 1 ccacctc 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 166
Number of extensions: 138
Number of successful extensions: 114
Number of sequences better than 100.0: 25
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 25
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)