BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m01-4*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus miR-m01-4-3p 14 20
bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8 12 80
ppc-miR-235-5p MIMAT0032854 Pristionchus pacificus miR-235-5p 12 80
mmu-miR-8109 MIMAT0031415 Mus musculus miR-8109 12 80
mmu-miR-8102 MIMAT0031406 Mus musculus miR-8102 12 80
prd-miR-7940a-3p MIMAT0030739 Panagrellus redivivus miR-7940a-3p 12 80
mmu-miR-7036b-5p MIMAT0029808 Mus musculus miR-7036b-5p 12 80
mmu-miR-7648-5p MIMAT0029798 Mus musculus miR-7648-5p 12 80
ipu-miR-7563a MIMAT0029560 Ictalurus punctatus miR-7563a 12 80
cin-miR-5602-3p MIMAT0022330 Ciona intestinalis miR-5602-3p 12 80
hsa-miR-4479 MIMAT0019011 Homo sapiens miR-4479 12 80
ppy-miR-1471 MIMAT0016233 Pongo pygmaeus miR-1471 12 80
hsa-miR-3186-3p MIMAT0015068 Homo sapiens miR-3186-3p 12 80
cqu-miR-2951-3p MIMAT0014433 Culex quinquefasciatus miR-2951-3p 12 80
bmo-miR-2848 MIMAT0013770 Bombyx mori miR-2848 12 80
dre-miR-2185-3p MIMAT0011290 Danio rerio miR-2185-3p 12 80
hsa-miR-1471 MIMAT0007349 Homo sapiens miR-1471 12 80
oan-miR-1385 MIMAT0007151 Ornithorhynchus anatinus miR-1385 12 80
>mcmv-miR-m01-4-3p MIMAT0005539 Mouse cytomegalovirus
miR-m01-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gccgcgt 7
|||||||
Sbjct: 2 gccgcgt 8
>bhv5-miR-B8 MIMAT0035712 Bovine herpesvirus miR-B8
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccgcg 6
||||||
Sbjct: 6 gccgcg 1
>ppc-miR-235-5p MIMAT0032854 Pristionchus pacificus miR-235-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gccgcg 6
||||||
Sbjct: 3 gccgcg 8
>mmu-miR-8109 MIMAT0031415 Mus musculus miR-8109
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gccgcg 6
||||||
Sbjct: 3 gccgcg 8
>mmu-miR-8102 MIMAT0031406 Mus musculus miR-8102
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgt 7
||||||
Sbjct: 8 ccgcgt 3
>prd-miR-7940a-3p MIMAT0030739 Panagrellus redivivus
miR-7940a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgt 7
||||||
Sbjct: 8 ccgcgt 3
>mmu-miR-7036b-5p MIMAT0029808 Mus musculus miR-7036b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgt 7
||||||
Sbjct: 6 ccgcgt 1
>mmu-miR-7648-5p MIMAT0029798 Mus musculus miR-7648-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgt 7
||||||
Sbjct: 1 ccgcgt 6
>ipu-miR-7563a MIMAT0029560 Ictalurus punctatus miR-7563a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgt 7
||||||
Sbjct: 3 ccgcgt 8
>cin-miR-5602-3p MIMAT0022330 Ciona intestinalis miR-5602-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgt 7
||||||
Sbjct: 3 ccgcgt 8
>hsa-miR-4479 MIMAT0019011 Homo sapiens miR-4479
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccgcg 6
||||||
Sbjct: 8 gccgcg 3
>ppy-miR-1471 MIMAT0016233 Pongo pygmaeus miR-1471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgt 7
||||||
Sbjct: 3 ccgcgt 8
>hsa-miR-3186-3p MIMAT0015068 Homo sapiens miR-3186-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ccgcgt 7
||||||
Sbjct: 8 ccgcgt 3
>cqu-miR-2951-3p MIMAT0014433 Culex quinquefasciatus miR-2951-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgt 7
||||||
Sbjct: 3 ccgcgt 8
>bmo-miR-2848 MIMAT0013770 Bombyx mori miR-2848
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gccgcg 6
||||||
Sbjct: 8 gccgcg 3
>dre-miR-2185-3p MIMAT0011290 Danio rerio miR-2185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gccgcg 6
||||||
Sbjct: 1 gccgcg 6
>hsa-miR-1471 MIMAT0007349 Homo sapiens miR-1471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgt 7
||||||
Sbjct: 3 ccgcgt 8
>oan-miR-1385 MIMAT0007151 Ornithorhynchus anatinus miR-1385
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ccgcgt 7
||||||
Sbjct: 3 ccgcgt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 29
Number of extensions: 28
Number of successful extensions: 18
Number of sequences better than 100.0: 18
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 18
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
