BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-3*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D23-3p MIMAT0028200 Duck enteritis miR-D23-3p 14 20
gga-miR-1621-3p MIMAT0007489 Gallus gallus miR-1621-3p 14 20
mghv-miR-M1-3-5p MIMAT0017187 Mouse gammaherpesvirus miR-M1-3-5p 14 20
efu-miR-9277 MIMAT0034915 Eptesicus fuscus miR-9277 12 80
eca-miR-329b MIMAT0034487 Equus caballus miR-329b 12 80
ssa-miR-15c-2-3p MIMAT0032400 Salmo salar miR-15c-2-3p 12 80
bdi-miR7774-3p MIMAT0030299 Brachypodium distachyon miR7774-3p 12 80
asu-miR-5353-5p MIMAT0021566 Ascaris suum miR-5353-5p 12 80
osa-miR5077 MIMAT0020574 Oryza sativa miR5077 12 80
aly-miR3445-5p.1 MIMAT0017724 Arabidopsis lyrata miR3445-5p.1 12 80
dsi-miR-312-5p MIMAT0015282 Drosophila simulans miR-312-5p 12 80
dme-miR-996-5p MIMAT0020895 Drosophila melanogaster miR-996-5p 12 80
mmu-miR-541-3p MIMAT0017209 Mus musculus miR-541-3p 12 80
ath-miR416 MIMAT0001324 Arabidopsis thaliana miR416 12 80
dme-miR-312-5p MIMAT0020838 Drosophila melanogaster miR-312-5p 12 80
>dev-miR-D23-3p MIMAT0028200 Duck enteritis miR-D23-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgaacc 7
|||||||
Sbjct: 2 gcgaacc 8
>gga-miR-1621-3p MIMAT0007489 Gallus gallus miR-1621-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gcgaacc 7
|||||||
Sbjct: 7 gcgaacc 1
>mghv-miR-M1-3-5p MIMAT0017187 Mouse gammaherpesvirus
miR-M1-3-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgaacc 7
|||||||
Sbjct: 2 gcgaacc 8
>efu-miR-9277 MIMAT0034915 Eptesicus fuscus miR-9277
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgaacc 7
||||||
Sbjct: 6 cgaacc 1
>eca-miR-329b MIMAT0034487 Equus caballus miR-329b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgaacc 7
||||||
Sbjct: 3 cgaacc 8
>ssa-miR-15c-2-3p MIMAT0032400 Salmo salar miR-15c-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgaacc 7
||||||
Sbjct: 1 cgaacc 6
>bdi-miR7774-3p MIMAT0030299 Brachypodium distachyon miR7774-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgaac 6
||||||
Sbjct: 3 gcgaac 8
>asu-miR-5353-5p MIMAT0021566 Ascaris suum miR-5353-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgaac 6
||||||
Sbjct: 3 gcgaac 8
>osa-miR5077 MIMAT0020574 Oryza sativa miR5077
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgaac 6
||||||
Sbjct: 6 gcgaac 1
>aly-miR3445-5p.1 MIMAT0017724 Arabidopsis lyrata miR3445-5p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgaacc 7
||||||
Sbjct: 1 cgaacc 6
>dsi-miR-312-5p MIMAT0015282 Drosophila simulans miR-312-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgaacc 7
||||||
Sbjct: 7 cgaacc 2
>dme-miR-996-5p MIMAT0020895 Drosophila melanogaster miR-996-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgaac 6
||||||
Sbjct: 1 gcgaac 6
>mmu-miR-541-3p MIMAT0017209 Mus musculus miR-541-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgaac 6
||||||
Sbjct: 3 gcgaac 8
>ath-miR416 MIMAT0001324 Arabidopsis thaliana miR416
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgaacc 7
||||||
Sbjct: 6 cgaacc 1
>dme-miR-312-5p MIMAT0020838 Drosophila melanogaster miR-312-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgaacc 7
||||||
Sbjct: 7 cgaacc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 23
Number of extensions: 20
Number of successful extensions: 15
Number of sequences better than 100.0: 15
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
