BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hhv6b-miR-ro6-1*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR160a-3p MIMAT0037157 Aegilops tauschii miR160a-3p 14 20
hhv6b-miR-Ro6-1-3p MIMAT0023511 Human herpesvirus miR-Ro6-1-3p 14 20
smo-miR1082a MIMAT0005232 Selaginella moellendorffii miR1082a 14 20
dre-miR-733 MIMAT0003763 Danio rerio miR-733 14 20
hvu-miR397b-3p MIMAT0035814 Hordeum vulgare miR397b-3p 12 80
sma-miR-8444-3p MIMAT0033597 Schistosoma mansoni miR-8444-3p 12 80
ppe-miR8132 MIMAT0031562 Prunus persica miR8132 12 80
mdo-miR-7398f-3p MIMAT0028899 Monodelphis domestica miR-7398f-3p 12 80
mdo-miR-7253-3p MIMAT0028473 Monodelphis domestica miR-7253-3p 12 80
mdm-miR319c MIMAT0026058 Malus domestica miR319c 12 80
gga-miR-6579-5p MIMAT0025665 Gallus gallus miR-6579-5p 12 80
mmu-miR-6351 MIMAT0025094 Mus musculus miR-6351 12 80
mmu-miR-6239 MIMAT0024860 Mus musculus miR-6239 12 80
rno-miR-1306-3p MIMAT0024852 Rattus norvegicus miR-1306-3p 12 80
mtr-miR4414a-3p MIMAT0021207 Medicago truncatula miR4414a-3p 12 80
gma-miR4414-3p MIMAT0032112 Glycine max miR4414-3p 12 80
ame-miR-3768 MIMAT0018542 Apis mellifera miR-3768 12 80
bmo-miR-3235 MIMAT0015418 Bombyx mori miR-3235 12 80
cte-miR-2718 MIMAT0013587 Capitella teleta miR-2718 12 80
cte-miR-2712 MIMAT0013581 Capitella teleta miR-2712 12 80
mdv1-miR-M10-5p MIMAT0007294 Mareks disease miR-M10-5p 12 80
cre-miR1148.1 MIMAT0005386 Chlamydomonas reinhardtii miR1148.1 12 80
cre-miR1145.2 MIMAT0005381 Chlamydomonas reinhardtii miR1145.2 12 80
tae-miR1125 MIMAT0005360 Triticum aestivum miR1125 12 80
cel-miR-249-5p MIMAT0020338 Caenorhabditis elegans miR-249-5p 12 80
>ata-miR160a-3p MIMAT0037157 Aegilops tauschii miR160a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgttgg 7
|||||||
Sbjct: 1 gcgttgg 7
>hhv6b-miR-Ro6-1-3p MIMAT0023511 Human herpesvirus miR-Ro6-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgttgg 7
|||||||
Sbjct: 2 gcgttgg 8
>smo-miR1082a MIMAT0005232 Selaginella moellendorffii miR1082a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgttgg 7
|||||||
Sbjct: 1 gcgttgg 7
>dre-miR-733 MIMAT0003763 Danio rerio miR-733
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcgttgg 7
|||||||
Sbjct: 2 gcgttgg 8
>hvu-miR397b-3p MIMAT0035814 Hordeum vulgare miR397b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgttg 6
||||||
Sbjct: 8 gcgttg 3
>sma-miR-8444-3p MIMAT0033597 Schistosoma mansoni miR-8444-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgttg 6
||||||
Sbjct: 6 gcgttg 1
>ppe-miR8132 MIMAT0031562 Prunus persica miR8132
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgg 7
||||||
Sbjct: 7 cgttgg 2
>mdo-miR-7398f-3p MIMAT0028899 Monodelphis domestica
miR-7398f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgttg 6
||||||
Sbjct: 6 gcgttg 1
>mdo-miR-7253-3p MIMAT0028473 Monodelphis domestica miR-7253-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgg 7
||||||
Sbjct: 1 cgttgg 6
>mdm-miR319c MIMAT0026058 Malus domestica miR319c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgg 7
||||||
Sbjct: 8 cgttgg 3
>gga-miR-6579-5p MIMAT0025665 Gallus gallus miR-6579-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgttg 6
||||||
Sbjct: 6 gcgttg 1
>mmu-miR-6351 MIMAT0025094 Mus musculus miR-6351
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgttg 6
||||||
Sbjct: 3 gcgttg 8
>mmu-miR-6239 MIMAT0024860 Mus musculus miR-6239
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgttg 6
||||||
Sbjct: 3 gcgttg 8
>rno-miR-1306-3p MIMAT0024852 Rattus norvegicus miR-1306-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgg 7
||||||
Sbjct: 3 cgttgg 8
>mtr-miR4414a-3p MIMAT0021207 Medicago truncatula miR4414a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgg 7
||||||
Sbjct: 8 cgttgg 3
>gma-miR4414-3p MIMAT0032112 Glycine max miR4414-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgg 7
||||||
Sbjct: 7 cgttgg 2
>ame-miR-3768 MIMAT0018542 Apis mellifera miR-3768
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgg 7
||||||
Sbjct: 6 cgttgg 1
>bmo-miR-3235 MIMAT0015418 Bombyx mori miR-3235
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgg 7
||||||
Sbjct: 7 cgttgg 2
>cte-miR-2718 MIMAT0013587 Capitella teleta miR-2718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgg 7
||||||
Sbjct: 8 cgttgg 3
>cte-miR-2712 MIMAT0013581 Capitella teleta miR-2712
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttgg 7
||||||
Sbjct: 3 cgttgg 8
>mdv1-miR-M10-5p MIMAT0007294 Mareks disease miR-M10-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgttg 6
||||||
Sbjct: 1 gcgttg 6
>cre-miR1148.1 MIMAT0005386 Chlamydomonas reinhardtii miR1148.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgg 7
||||||
Sbjct: 6 cgttgg 1
>cre-miR1145.2 MIMAT0005381 Chlamydomonas reinhardtii miR1145.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcgttg 6
||||||
Sbjct: 3 gcgttg 8
>tae-miR1125 MIMAT0005360 Triticum aestivum miR1125
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttgg 7
||||||
Sbjct: 8 cgttgg 3
>cel-miR-249-5p MIMAT0020338 Caenorhabditis elegans miR-249-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcgttg 6
||||||
Sbjct: 8 gcgttg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 40
Number of successful extensions: 25
Number of sequences better than 100.0: 25
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)