BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bkv-miR-b1-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-36-5p MIMAT0035258 Gyrodactylus salaris miR-36-5p 14 20
eca-miR-9184 MIMAT0034765 Equus caballus miR-9184 14 20
bkv-miR-B1-3p MIMAT0009150 BK polyomavirus miR-B1-3p 14 20
jcv-miR-J1-3p MIMAT0009148 JC polyomavirus miR-J1-3p 14 20
ocu-miR-498 MIMAT0036330 Oryctolagus cuniculus miR-498 12 80
nve-miR-9414-5p MIMAT0035369 Nematostella vectensis miR-9414-5p 12 80
gsa-miR-9395-5p MIMAT0035336 Gyrodactylus salaris miR-9395-5p 12 80
dme-miR-9377-3p MIMAT0035218 Drosophila melanogaster miR-9377-3p 12 80
efu-miR-9237b MIMAT0034835 Eptesicus fuscus miR-9237b 12 80
sma-miR-124b-3p MIMAT0033619 Schistosoma mansoni miR-124b-3p 12 80
ppc-miR-8346-5p MIMAT0033238 Pristionchus pacificus miR-8346-5p 12 80
ppc-miR-8333-5p MIMAT0033210 Pristionchus pacificus miR-8333-5p 12 80
ptc-miR6459b MIMAT0030396 Populus trichocarpa miR6459b 12 80
bdi-miR7738-3p MIMAT0030213 Brachypodium distachyon miR7738-3p 12 80
mtr-miR2667b MIMAT0029976 Medicago truncatula miR2667b 12 80
lja-miR7526h MIMAT0029349 Lotus japonicus miR7526h 12 80
lja-miR7526g MIMAT0029348 Lotus japonicus miR7526g 12 80
lja-miR7526f MIMAT0029347 Lotus japonicus miR7526f 12 80
lja-miR7526e MIMAT0029346 Lotus japonicus miR7526e 12 80
lja-miR7526d MIMAT0029345 Lotus japonicus miR7526d 12 80
lja-miR7526c MIMAT0029344 Lotus japonicus miR7526c 12 80
lja-miR7526b MIMAT0029343 Lotus japonicus miR7526b 12 80
lja-miR7526a MIMAT0029342 Lotus japonicus miR7526a 12 80
mdo-miR-7298-3p MIMAT0028585 Monodelphis domestica miR-7298-3p 12 80
cme-miR167e MIMAT0026177 Cucumis melo miR167e 12 80
cca-miR6108e-3p MIMAT0024558 Cynara cardunculus miR6108e-3p 12 80
ola-miR-137 MIMAT0022577 Oryzias latipes miR-137 12 80
tur-miR-5733-5p MIMAT0023064 Tetranychus urticae miR-5733-5p 12 80
ssl-miR1078 MIMAT0022523 Salvia sclarea miR1078 12 80
sbi-miR5389 MIMAT0021687 Sorghum bicolor miR5389 12 80
bdi-miR5170 MIMAT0020714 Brachypodium distachyon miR5170 12 80
osa-miR5071 MIMAT0020551 Oryza sativa miR5071 12 80
sko-miR-4835-3p MIMAT0020052 Saccoglossus kowalevskii miR-4835-3p 12 80
gma-miR4369 MIMAT0018270 Glycine max miR4369 12 80
tca-miR-3863-5p MIMAT0018808 Tribolium castaneum miR-3863-5p 12 80
tca-miR-87b-5p MIMAT0018768 Tribolium castaneum miR-87b-5p 12 80
tca-miR-3802-5p MIMAT0018620 Tribolium castaneum miR-3802-5p 12 80
hsa-miR-1273e MIMAT0018079 Homo sapiens miR-1273e 12 80
cin-miR-4050-3p MIMAT0016590 Ciona intestinalis miR-4050-3p 12 80
ppy-miR-498 MIMAT0015919 Pongo pygmaeus miR-498 12 80
aly-miR3445-3p.2 MIMAT0017726 Arabidopsis lyrata miR3445-3p.2 12 80
aly-miR825-5p MIMAT0017605 Arabidopsis lyrata miR825-5p 12 80
api-miR-3023 MIMAT0014759 Acyrthosiphon pisum miR-3023 12 80
aqc-miR167 MIMAT0012560 Aquilegia caerulea miR167 12 80
mtr-miR2667a MIMAT0013474 Medicago truncatula miR2667a 12 80
sme-miR-2203-3p MIMAT0011420 Schmidtea mediterranea miR-2203-3p 12 80
sme-miR-753e-5p MIMAT0012168 Schmidtea mediterranea miR-753e-5p 12 80
sme-miR-753b-5p MIMAT0011395 Schmidtea mediterranea miR-753b-5p 12 80
nve-miR-2044-5p MIMAT0009812 Nematostella vectensis miR-2044-5p 12 80
cte-miR-1996b MIMAT0009712 Capitella teleta miR-1996b 12 80
tca-miR-87a-5p MIMAT0019110 Tribolium castaneum miR-87a-5p 12 80
ptr-miR-498 MIMAT0008171 Pan troglodytes miR-498 12 80
mml-miR-498 MIMAT0006360 Macaca mulatta miR-498 12 80
csa-miR-1473 MIMAT0006069 Ciona savignyi miR-1473 12 80
cin-miR-1473-3p MIMAT0006067 Ciona intestinalis miR-1473-3p 12 80
odi-miR-1473 MIMAT0006024 Oikopleura dioica miR-1473 12 80
ppt-miR897 MIMAT0004368 Physcomitrella patens miR897 12 80
hsa-miR-561-5p MIMAT0022706 Homo sapiens miR-561-5p 12 80
hsa-miR-498 MIMAT0002824 Homo sapiens miR-498 12 80
>gsa-miR-36-5p MIMAT0035258 Gyrodactylus salaris miR-36-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgat 7
|||||||
Sbjct: 2 gcttgat 8
>eca-miR-9184 MIMAT0034765 Equus caballus miR-9184
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgat 7
|||||||
Sbjct: 2 gcttgat 8
>bkv-miR-B1-3p MIMAT0009150 BK polyomavirus miR-B1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgat 7
|||||||
Sbjct: 2 gcttgat 8
>jcv-miR-J1-3p MIMAT0009148 JC polyomavirus miR-J1-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gcttgat 7
|||||||
Sbjct: 2 gcttgat 8
>ocu-miR-498 MIMAT0036330 Oryctolagus cuniculus miR-498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 8 gcttga 3
>nve-miR-9414-5p MIMAT0035369 Nematostella vectensis miR-9414-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 3 cttgat 8
>gsa-miR-9395-5p MIMAT0035336 Gyrodactylus salaris miR-9395-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 3 cttgat 8
>dme-miR-9377-3p MIMAT0035218 Drosophila melanogaster
miR-9377-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 1 cttgat 6
>efu-miR-9237b MIMAT0034835 Eptesicus fuscus miR-9237b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 2 cttgat 7
>sma-miR-124b-3p MIMAT0033619 Schistosoma mansoni miR-124b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>ppc-miR-8346-5p MIMAT0033238 Pristionchus pacificus miR-8346-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 1 cttgat 6
>ppc-miR-8333-5p MIMAT0033210 Pristionchus pacificus miR-8333-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>ptc-miR6459b MIMAT0030396 Populus trichocarpa miR6459b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 8 gcttga 3
>bdi-miR7738-3p MIMAT0030213 Brachypodium distachyon miR7738-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>mtr-miR2667b MIMAT0029976 Medicago truncatula miR2667b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 3 cttgat 8
>lja-miR7526h MIMAT0029349 Lotus japonicus miR7526h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>lja-miR7526g MIMAT0029348 Lotus japonicus miR7526g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>lja-miR7526f MIMAT0029347 Lotus japonicus miR7526f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>lja-miR7526e MIMAT0029346 Lotus japonicus miR7526e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>lja-miR7526d MIMAT0029345 Lotus japonicus miR7526d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>lja-miR7526c MIMAT0029344 Lotus japonicus miR7526c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>lja-miR7526b MIMAT0029343 Lotus japonicus miR7526b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>lja-miR7526a MIMAT0029342 Lotus japonicus miR7526a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>mdo-miR-7298-3p MIMAT0028585 Monodelphis domestica miR-7298-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>cme-miR167e MIMAT0026177 Cucumis melo miR167e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 6 gcttga 1
>cca-miR6108e-3p MIMAT0024558 Cynara cardunculus miR6108e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>ola-miR-137 MIMAT0022577 Oryzias latipes miR-137
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>tur-miR-5733-5p MIMAT0023064 Tetranychus urticae miR-5733-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 3 cttgat 8
>ssl-miR1078 MIMAT0022523 Salvia sclarea miR1078
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 1 cttgat 6
>sbi-miR5389 MIMAT0021687 Sorghum bicolor miR5389
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 1 gcttga 6
>bdi-miR5170 MIMAT0020714 Brachypodium distachyon miR5170
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 8 cttgat 3
>osa-miR5071 MIMAT0020551 Oryza sativa miR5071
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 6 gcttga 1
>sko-miR-4835-3p MIMAT0020052 Saccoglossus kowalevskii
miR-4835-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 6 gcttga 1
>gma-miR4369 MIMAT0018270 Glycine max miR4369
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 8 cttgat 3
>tca-miR-3863-5p MIMAT0018808 Tribolium castaneum miR-3863-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 8 cttgat 3
>tca-miR-87b-5p MIMAT0018768 Tribolium castaneum miR-87b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>tca-miR-3802-5p MIMAT0018620 Tribolium castaneum miR-3802-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>hsa-miR-1273e MIMAT0018079 Homo sapiens miR-1273e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>cin-miR-4050-3p MIMAT0016590 Ciona intestinalis miR-4050-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>ppy-miR-498 MIMAT0015919 Pongo pygmaeus miR-498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 8 gcttga 3
>aly-miR3445-3p.2 MIMAT0017726 Arabidopsis lyrata miR3445-3p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 1 cttgat 6
>aly-miR825-5p MIMAT0017605 Arabidopsis lyrata miR825-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 6 gcttga 1
>api-miR-3023 MIMAT0014759 Acyrthosiphon pisum miR-3023
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>aqc-miR167 MIMAT0012560 Aquilegia caerulea miR167
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 6 gcttga 1
>mtr-miR2667a MIMAT0013474 Medicago truncatula miR2667a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttgat 7
||||||
Sbjct: 3 cttgat 8
>sme-miR-2203-3p MIMAT0011420 Schmidtea mediterranea miR-2203-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>sme-miR-753e-5p MIMAT0012168 Schmidtea mediterranea miR-753e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>sme-miR-753b-5p MIMAT0011395 Schmidtea mediterranea miR-753b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>nve-miR-2044-5p MIMAT0009812 Nematostella vectensis miR-2044-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 8 cttgat 3
>cte-miR-1996b MIMAT0009712 Capitella teleta miR-1996b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>tca-miR-87a-5p MIMAT0019110 Tribolium castaneum miR-87a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gcttga 6
||||||
Sbjct: 3 gcttga 8
>ptr-miR-498 MIMAT0008171 Pan troglodytes miR-498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 8 gcttga 3
>mml-miR-498 MIMAT0006360 Macaca mulatta miR-498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 8 gcttga 3
>csa-miR-1473 MIMAT0006069 Ciona savignyi miR-1473
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 6 gcttga 1
>cin-miR-1473-3p MIMAT0006067 Ciona intestinalis miR-1473-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 6 gcttga 1
>odi-miR-1473 MIMAT0006024 Oikopleura dioica miR-1473
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 6 gcttga 1
>ppt-miR897 MIMAT0004368 Physcomitrella patens miR897
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 8 cttgat 3
>hsa-miR-561-5p MIMAT0022706 Homo sapiens miR-561-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttgat 7
||||||
Sbjct: 6 cttgat 1
>hsa-miR-498 MIMAT0002824 Homo sapiens miR-498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gcttga 6
||||||
Sbjct: 8 gcttga 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 67
Number of extensions: 63
Number of successful extensions: 59
Number of sequences better than 100.0: 59
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 59
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
