BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d18-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p 14 20
cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a 14 20
dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p 14 20
bdi-miR5181b MIMAT0020705 Brachypodium distachyon miR5181b 14 20
ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p 12 80
prd-miR-7951-5p MIMAT0030774 Panagrellus redivivus miR-7951-5p 12 80
mtr-miR7697-3p MIMAT0029995 Medicago truncatula miR7697-3p 12 80
ipu-miR-7549 MIMAT0029543 Ictalurus punctatus miR-7549 12 80
hco-miR-5935 MIMAT0023427 Haemonchus contortus miR-5935 12 80
mmu-miR-1843b-3p MIMAT0019346 Mus musculus miR-1843b-3p 12 80
ame-miR-3737 MIMAT0018606 Apis mellifera miR-3737 12 80
ppy-miR-638 MIMAT0016076 Pongo pygmaeus miR-638 12 80
dsi-miR-1001-3p MIMAT0012507 Drosophila simulans miR-1001-3p 12 80
mml-miR-638 MIMAT0006480 Macaca mulatta miR-638 12 80
oan-miR-1420c-5p MIMAT0026754 Ornithorhynchus anatinus miR-1420c-5p 12 80
cre-miR1172.2 MIMAT0005432 Chlamydomonas reinhardtii miR1172.2 12 80
hsa-miR-638 MIMAT0003308 Homo sapiens miR-638 12 80
>ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggatcgg 7
|||||||
Sbjct: 8 ggatcgg 2
>cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggatcgg 7
|||||||
Sbjct: 2 ggatcgg 8
>dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggatcgg 7
|||||||
Sbjct: 2 ggatcgg 8
>bdi-miR5181b MIMAT0020705 Brachypodium distachyon miR5181b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggatcgg 7
|||||||
Sbjct: 8 ggatcgg 2
>ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatcg 6
||||||
Sbjct: 3 ggatcg 8
>prd-miR-7951-5p MIMAT0030774 Panagrellus redivivus miR-7951-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatcg 6
||||||
Sbjct: 6 ggatcg 1
>mtr-miR7697-3p MIMAT0029995 Medicago truncatula miR7697-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatcgg 7
||||||
Sbjct: 7 gatcgg 2
>ipu-miR-7549 MIMAT0029543 Ictalurus punctatus miR-7549
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatcgg 7
||||||
Sbjct: 1 gatcgg 6
>hco-miR-5935 MIMAT0023427 Haemonchus contortus miR-5935
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatcg 6
||||||
Sbjct: 3 ggatcg 8
>mmu-miR-1843b-3p MIMAT0019346 Mus musculus miR-1843b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatcgg 7
||||||
Sbjct: 6 gatcgg 1
>ame-miR-3737 MIMAT0018606 Apis mellifera miR-3737
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gatcgg 7
||||||
Sbjct: 1 gatcgg 6
>ppy-miR-638 MIMAT0016076 Pongo pygmaeus miR-638
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatcg 6
||||||
Sbjct: 3 ggatcg 8
>dsi-miR-1001-3p MIMAT0012507 Drosophila simulans miR-1001-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggatcg 6
||||||
Sbjct: 6 ggatcg 1
>mml-miR-638 MIMAT0006480 Macaca mulatta miR-638
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatcg 6
||||||
Sbjct: 3 ggatcg 8
>oan-miR-1420c-5p MIMAT0026754 Ornithorhynchus anatinus
miR-1420c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gatcgg 7
||||||
Sbjct: 8 gatcgg 3
>cre-miR1172.2 MIMAT0005432 Chlamydomonas reinhardtii miR1172.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatcg 6
||||||
Sbjct: 3 ggatcg 8
>hsa-miR-638 MIMAT0003308 Homo sapiens miR-638
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggatcg 6
||||||
Sbjct: 3 ggatcg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 26
Number of extensions: 22
Number of successful extensions: 17
Number of sequences better than 100.0: 17
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 17
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)