BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d18-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p               14      20
cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a                  14      20
dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p                  14      20
bdi-miR5181b MIMAT0020705 Brachypodium distachyon miR5181b             14      20
ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p                    12      80
prd-miR-7951-5p MIMAT0030774 Panagrellus redivivus miR-7951-5p         12      80
mtr-miR7697-3p MIMAT0029995 Medicago truncatula miR7697-3p             12      80
ipu-miR-7549 MIMAT0029543 Ictalurus punctatus miR-7549                 12      80
hco-miR-5935 MIMAT0023427 Haemonchus contortus miR-5935                12      80
mmu-miR-1843b-3p MIMAT0019346 Mus musculus miR-1843b-3p                12      80
ame-miR-3737 MIMAT0018606 Apis mellifera miR-3737                      12      80
ppy-miR-638 MIMAT0016076 Pongo pygmaeus miR-638                        12      80
dsi-miR-1001-3p MIMAT0012507 Drosophila simulans miR-1001-3p           12      80
mml-miR-638 MIMAT0006480 Macaca mulatta miR-638                        12      80
oan-miR-1420c-5p MIMAT0026754 Ornithorhynchus anatinus miR-1420c-5p    12      80
cre-miR1172.2 MIMAT0005432 Chlamydomonas reinhardtii miR1172.2         12      80
hsa-miR-638 MIMAT0003308 Homo sapiens miR-638                          12      80
>ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggatcgg 7
         |||||||
Sbjct: 8 ggatcgg 2
>cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggatcgg 7
         |||||||
Sbjct: 2 ggatcgg 8
>dev-miR-D18-5p MIMAT0028192 Duck enteritis miR-D18-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggatcgg 7
         |||||||
Sbjct: 2 ggatcgg 8
>bdi-miR5181b MIMAT0020705 Brachypodium distachyon miR5181b
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggatcgg 7
         |||||||
Sbjct: 8 ggatcgg 2
>ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatcg 6
         ||||||
Sbjct: 3 ggatcg 8
>prd-miR-7951-5p MIMAT0030774 Panagrellus redivivus miR-7951-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatcg 6
         ||||||
Sbjct: 6 ggatcg 1
>mtr-miR7697-3p MIMAT0029995 Medicago truncatula miR7697-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatcgg 7
         ||||||
Sbjct: 7 gatcgg 2
>ipu-miR-7549 MIMAT0029543 Ictalurus punctatus miR-7549
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatcgg 7
         ||||||
Sbjct: 1 gatcgg 6
>hco-miR-5935 MIMAT0023427 Haemonchus contortus miR-5935
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatcg 6
         ||||||
Sbjct: 3 ggatcg 8
>mmu-miR-1843b-3p MIMAT0019346 Mus musculus miR-1843b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatcgg 7
         ||||||
Sbjct: 6 gatcgg 1
>ame-miR-3737 MIMAT0018606 Apis mellifera miR-3737
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatcgg 7
         ||||||
Sbjct: 1 gatcgg 6
>ppy-miR-638 MIMAT0016076 Pongo pygmaeus miR-638
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatcg 6
         ||||||
Sbjct: 3 ggatcg 8
>dsi-miR-1001-3p MIMAT0012507 Drosophila simulans miR-1001-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatcg 6
         ||||||
Sbjct: 6 ggatcg 1
>mml-miR-638 MIMAT0006480 Macaca mulatta miR-638
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatcg 6
         ||||||
Sbjct: 3 ggatcg 8
>oan-miR-1420c-5p MIMAT0026754 Ornithorhynchus anatinus
         miR-1420c-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatcgg 7
         ||||||
Sbjct: 8 gatcgg 3
>cre-miR1172.2 MIMAT0005432 Chlamydomonas reinhardtii miR1172.2
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatcg 6
         ||||||
Sbjct: 3 ggatcg 8
>hsa-miR-638 MIMAT0003308 Homo sapiens miR-638
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatcg 6
         ||||||
Sbjct: 3 ggatcg 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 26
Number of extensions: 22
Number of successful extensions: 17
Number of sequences better than 100.0: 17
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 17
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)