BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hhv6b-miR-ro6-4*
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8234-3p MIMAT0032923 Pristionchus pacificus miR-8234-3p        14      20
mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p                14      20
sbi-miR6220-5p MIMAT0026404 Sorghum bicolor miR6220-5p                 14      20
hhv6b-miR-Ro6-4-5p MIMAT0026462 Human herpesvirus miR-Ro6-4-5p         14      20
hsa-miR-4534 MIMAT0019073 Homo sapiens miR-4534                        14      20
ame-miR-9876 MIMAT0037280 Apis mellifera miR-9876                      12      80
gma-miR9763 MIMAT0036400 Glycine max miR9763                           12      80
nve-miR-9465 MIMAT0035424 Nematostella vectensis miR-9465              12      80
eca-miR-8930 MIMAT0034458 Equus caballus miR-8930                      12      80
atr-miR2950 MIMAT0033951 Amborella trichopoda miR2950                  12      80
pxy-miR-8504 MIMAT0033716 Plutella xylostella miR-8504                 12      80
ppc-miR-2235b-5p MIMAT0032850 Pristionchus pacificus miR-2235b-5p      12      80
hsa-miR-8069 MIMAT0030996 Homo sapiens miR-8069                        12      80
stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035                     12      80
stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p             12      80
bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon miR7717a-3p       12      80
cbn-miR-789b MIMAT0029663 Caenorhabditis brenneri miR-789b             12      80
cbr-miR-7583c-3p MIMAT0029594 Caenorhabditis briggsae miR-7583c-3p     12      80
cbr-miR-7583b MIMAT0029586 Caenorhabditis briggsae miR-7583b           12      80
cbr-miR-7583a-3p MIMAT0029585 Caenorhabditis briggsae miR-7583a-3p     12      80
mes-miR2950 MIMAT0029309 Manihot esculenta miR2950                     12      80
oan-miR-7408-3p MIMAT0028963 Ornithorhynchus anatinus miR-7408-3p      12      80
mdo-miR-7357-5p MIMAT0028726 Monodelphis domestica miR-7357-5p         12      80
mdo-miR-7309-5p MIMAT0028616 Monodelphis domestica miR-7309-5p         12      80
hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p                  12      80
dev-miR-D18-3p MIMAT0028193 Duck enteritis miR-D18-3p                  12      80
mmu-miR-7093-3p MIMAT0028093 Mus musculus miR-7093-3p                  12      80
mmu-miR-7020-5p MIMAT0027944 Mus musculus miR-7020-5p                  12      80
mmu-miR-6906-5p MIMAT0027712 Mus musculus miR-6906-5p                  12      80
ptr-miR-2392 MIMAT0024037 Pan troglodytes miR-2392                     12      80
cin-miR-5605-3p MIMAT0022338 Ciona intestinalis miR-5605-3p            12      80
pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548                  12      80
hsa-miR-2392 MIMAT0019043 Homo sapiens miR-2392                        12      80
ame-miR-3728 MIMAT0018595 Apis mellifera miR-3728                      12      80
vvi-miR2950-5p MIMAT0018009 Vitis vinifera miR2950-5p                  12      80
esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p        12      80
esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p        12      80
esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p        12      80
esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p        12      80
esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p        12      80
aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p                12      80
aly-miR842-5p MIMAT0017627 Arabidopsis lyrata miR842-5p                12      80
bmo-miR-3343 MIMAT0015530 Bombyx mori miR-3343                         12      80
bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206                         12      80
mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p                 12      80
bta-miR-2392 MIMAT0011945 Bos taurus miR-2392                          12      80
cel-miR-2211-5p MIMAT0011437 Caenorhabditis elegans miR-2211-5p        12      80
sme-miR-2171 MIMAT0011271 Schmidtea mediterranea miR-2171              12      80
mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969                        12      80
gga-miR-1733 MIMAT0007635 Gallus gallus miR-1733                       12      80
oan-miR-1400-5p MIMAT0007205 Ornithorhynchus anatinus miR-1400-5p      12      80
cre-miR1170.1 MIMAT0005429 Chlamydomonas reinhardtii miR1170.1         12      80
ppt-miR1077-3p MIMAT0005209 Physcomitrella patens miR1077-3p           12      80
mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p                 12      80
ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p              12      80
sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p          12      80
hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p                   12      80
hcmv-miR-UL70-3p MIMAT0003343 Human cytomegalovirus miR-UL70-3p        12      80
hsa-miR-432-3p MIMAT0002815 Homo sapiens miR-432-3p                    12      80
rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p               12      80
>ppc-miR-8234-3p MIMAT0032923 Pristionchus pacificus miR-8234-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggatgga 7
         |||||||
Sbjct: 8 ggatgga 2
>mml-miR-7196-5p MIMAT0028352 Macaca mulatta miR-7196-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggatgga 7
         |||||||
Sbjct: 7 ggatgga 1
>sbi-miR6220-5p MIMAT0026404 Sorghum bicolor miR6220-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 ggatgga 7
         |||||||
Sbjct: 8 ggatgga 2
>hhv6b-miR-Ro6-4-5p MIMAT0026462 Human herpesvirus miR-Ro6-4-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggatgga 7
         |||||||
Sbjct: 2 ggatgga 8
>hsa-miR-4534 MIMAT0019073 Homo sapiens miR-4534
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 ggatgga 7
         |||||||
Sbjct: 1 ggatgga 7
>ame-miR-9876 MIMAT0037280 Apis mellifera miR-9876
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>gma-miR9763 MIMAT0036400 Glycine max miR9763
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 8 ggatgg 3
>nve-miR-9465 MIMAT0035424 Nematostella vectensis miR-9465
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>eca-miR-8930 MIMAT0034458 Equus caballus miR-8930
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>atr-miR2950 MIMAT0033951 Amborella trichopoda miR2950
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 7 gatgga 2
>pxy-miR-8504 MIMAT0033716 Plutella xylostella miR-8504
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 6 ggatgg 1
>ppc-miR-2235b-5p MIMAT0032850 Pristionchus pacificus
         miR-2235b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 6 ggatgg 1
>hsa-miR-8069 MIMAT0030996 Homo sapiens miR-8069
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 1 ggatgg 6
>stu-miR8035 MIMAT0030945 Solanum tuberosum miR8035
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 6 gatgga 1
>stu-miR7980b-3p MIMAT0030930 Solanum tuberosum miR7980b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 3 gatgga 8
>bdi-miR7717a-3p MIMAT0030157 Brachypodium distachyon
         miR7717a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 1 gatgga 6
>cbn-miR-789b MIMAT0029663 Caenorhabditis brenneri miR-789b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 6 ggatgg 1
>cbr-miR-7583c-3p MIMAT0029594 Caenorhabditis briggsae
         miR-7583c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 6 ggatgg 1
>cbr-miR-7583b MIMAT0029586 Caenorhabditis briggsae miR-7583b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 6 ggatgg 1
>cbr-miR-7583a-3p MIMAT0029585 Caenorhabditis briggsae
         miR-7583a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 6 ggatgg 1
>mes-miR2950 MIMAT0029309 Manihot esculenta miR2950
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 7 gatgga 2
>oan-miR-7408-3p MIMAT0028963 Ornithorhynchus anatinus
         miR-7408-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>mdo-miR-7357-5p MIMAT0028726 Monodelphis domestica miR-7357-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 1 gatgga 6
>mdo-miR-7309-5p MIMAT0028616 Monodelphis domestica miR-7309-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>dev-miR-D18-3p MIMAT0028193 Duck enteritis miR-D18-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 6 ggatgg 1
>mmu-miR-7093-3p MIMAT0028093 Mus musculus miR-7093-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>mmu-miR-7020-5p MIMAT0027944 Mus musculus miR-7020-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>mmu-miR-6906-5p MIMAT0027712 Mus musculus miR-6906-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>ptr-miR-2392 MIMAT0024037 Pan troglodytes miR-2392
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>cin-miR-5605-3p MIMAT0022338 Ciona intestinalis miR-5605-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>pma-miR-4548 MIMAT0019580 Petromyzon marinus miR-4548
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 6 gatgga 1
>hsa-miR-2392 MIMAT0019043 Homo sapiens miR-2392
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>ame-miR-3728 MIMAT0018595 Apis mellifera miR-3728
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 6 ggatgg 1
>vvi-miR2950-5p MIMAT0018009 Vitis vinifera miR2950-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 7 gatgga 2
>esi-miR3454d-3p MIMAT0017784 Ectocarpus siliculosus miR3454d-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>esi-miR3454e-3p MIMAT0017770 Ectocarpus siliculosus miR3454e-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>esi-miR3454c-3p MIMAT0017752 Ectocarpus siliculosus miR3454c-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>esi-miR3454a-3p MIMAT0017748 Ectocarpus siliculosus miR3454a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>esi-miR3454g-3p MIMAT0017746 Ectocarpus siliculosus miR3454g-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>aly-miR861-3p MIMAT0017652 Arabidopsis lyrata miR861-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 1 gatgga 6
>aly-miR842-5p MIMAT0017627 Arabidopsis lyrata miR842-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 3 gatgga 8
>bmo-miR-3343 MIMAT0015530 Bombyx mori miR-3343
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>bmo-miR-3206 MIMAT0015384 Bombyx mori miR-3206
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>mdv2-miR-M32-5p MIMAT0012732 Mareks disease miR-M32-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>bta-miR-2392 MIMAT0011945 Bos taurus miR-2392
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>cel-miR-2211-5p MIMAT0011437 Caenorhabditis elegans miR-2211-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>sme-miR-2171 MIMAT0011271 Schmidtea mediterranea miR-2171
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 3 gatgga 8
>mmu-miR-1969 MIMAT0009442 Mus musculus miR-1969
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 3 gatgga 8
>gga-miR-1733 MIMAT0007635 Gallus gallus miR-1733
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>oan-miR-1400-5p MIMAT0007205 Ornithorhynchus anatinus
         miR-1400-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 1 gatgga 6
>cre-miR1170.1 MIMAT0005429 Chlamydomonas reinhardtii miR1170.1
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>ppt-miR1077-3p MIMAT0005209 Physcomitrella patens miR1077-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>mdv2-miR-M15-5p MIMAT0004453 Mareks disease miR-M15-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 1 gatgga 6
>ath-miR861-3p MIMAT0004306 Arabidopsis thaliana miR861-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 1 gatgga 6
>sme-miR-756-3p MIMAT0012127 Schmidtea mediterranea miR-756-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 8 gatgga 3
>hsv1-miR-H1-5p MIMAT0003744 Herpes Simplex miR-H1-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 1 gatgga 6
>hcmv-miR-UL70-3p MIMAT0003343 Human cytomegalovirus miR-UL70-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>hsa-miR-432-3p MIMAT0002815 Homo sapiens miR-432-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 ggatgg 6
         ||||||
Sbjct: 3 ggatgg 8
>rno-miR-141-5p MIMAT0017128 Rattus norvegicus miR-141-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gatgga 7
         ||||||
Sbjct: 6 gatgga 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 91
Number of extensions: 86
Number of successful extensions: 60
Number of sequences better than 100.0: 60
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 60
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)