BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m12*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8218b-5p MIMAT0033248 Pristionchus pacificus miR-8218b-5p 14 20
bdi-miR7723a-3p MIMAT0030173 Brachypodium distachyon miR7723a-3p 14 20
mdo-miR-7325-5p MIMAT0028650 Monodelphis domestica miR-7325-5p 14 20
aca-miR-5452-5p MIMAT0022075 Anolis carolinensis miR-5452-5p 14 20
ssc-miR-296-5p MIMAT0017952 Sus scrofa miR-296-5p 14 20
bta-miR-296-5p MIMAT0026918 Bos taurus miR-296-5p 14 20
mdv1-miR-M12-5p MIMAT0009209 Mareks disease miR-M12-5p 14 20
oan-miR-1363-5p MIMAT0007025 Ornithorhynchus anatinus miR-1363-5p 14 20
ame-miR-9894 MIMAT0037299 Apis mellifera miR-9894 12 80
tch-miR-328 MIMAT0036581 Tupaia chinensis miR-328 12 80
chi-miR-328-3p MIMAT0036139 Capra hircus miR-328-3p 12 80
chi-miR-1296 MIMAT0035938 Capra hircus miR-1296 12 80
bdi-miR9488 MIMAT0035495 Brachypodium distachyon miR9488 12 80
gsa-miR-281-5p MIMAT0035268 Gyrodactylus salaris miR-281-5p 12 80
eca-miR-9114 MIMAT0034663 Equus caballus miR-9114 12 80
cfa-miR-1296 MIMAT0034413 Canis familiaris miR-1296 12 80
gra-miR8699 MIMAT0034080 Gossypium raimondii miR8699 12 80
ppc-miR-8260-3p MIMAT0032990 Pristionchus pacificus miR-8260-3p 12 80
ppc-miR-8226-5p MIMAT0032896 Pristionchus pacificus miR-8226-5p 12 80
ssa-miR-8159-3p MIMAT0032743 Salmo salar miR-8159-3p 12 80
hsa-miR-7843-5p MIMAT0030411 Homo sapiens miR-7843-5p 12 80
mmu-miR-6955-5p MIMAT0027810 Mus musculus miR-6955-5p 12 80
mmu-miR-6923-5p MIMAT0027746 Mus musculus miR-6923-5p 12 80
hsa-miR-6877-5p MIMAT0027654 Homo sapiens miR-6877-5p 12 80
mmu-miR-6395 MIMAT0025146 Mus musculus miR-6395 12 80
mmu-miR-6337 MIMAT0025080 Mus musculus miR-6337 12 80
bta-miR-3141 MIMAT0024573 Bos taurus miR-3141 12 80
ppy-miR-2278 MIMAT0024406 Pongo pygmaeus miR-2278 12 80
mml-miR-1296-5p MIMAT0024328 Macaca mulatta miR-1296-5p 12 80
ggo-miR-1291 MIMAT0024208 Gorilla gorilla miR-1291 12 80
ggo-miR-1296 MIMAT0024172 Gorilla gorilla miR-1296 12 80
ggo-miR-328 MIMAT0024166 Gorilla gorilla miR-328 12 80
cgr-miR-328 MIMAT0023914 Cricetulus griseus miR-328 12 80
mmu-miR-5621-3p MIMAT0022370 Mus musculus miR-5621-3p 12 80
bfl-miR-4889a MIMAT0020476 Branchiostoma floridae miR-4889a 12 80
bfl-miR-34c MIMAT0020451 Branchiostoma floridae miR-34c 12 80
hsa-miR-4761-3p MIMAT0019909 Homo sapiens miR-4761-3p 12 80
hsa-miR-4726-5p MIMAT0019845 Homo sapiens miR-4726-5p 12 80
hsa-miR-4721 MIMAT0019835 Homo sapiens miR-4721 12 80
hsa-miR-4687-5p MIMAT0019774 Homo sapiens miR-4687-5p 12 80
hsa-miR-4632-5p MIMAT0022977 Homo sapiens miR-4632-5p 12 80
hsa-miR-3918 MIMAT0018192 Homo sapiens miR-3918 12 80
ssc-miR-1296-5p MIMAT0022964 Sus scrofa miR-1296-5p 12 80
rno-miR-328b-3p MIMAT0017904 Rattus norvegicus miR-328b-3p 12 80
ppy-miR-1296 MIMAT0016217 Pongo pygmaeus miR-1296 12 80
ppy-miR-328 MIMAT0015831 Pongo pygmaeus miR-328 12 80
ppy-miR-296-5p MIMAT0015809 Pongo pygmaeus miR-296-5p 12 80
hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141 12 80
api-miR-3042 MIMAT0014780 Acyrthosiphon pisum miR-3042 12 80
ssc-miR-328 MIMAT0013949 Sus scrofa miR-328 12 80
eca-miR-328 MIMAT0012929 Equus caballus miR-328 12 80
eca-miR-1296 MIMAT0012890 Equus caballus miR-1296 12 80
bta-miR-2467-3p MIMAT0012057 Bos taurus miR-2467-3p 12 80
bta-miR-2443 MIMAT0012018 Bos taurus miR-2443 12 80
hsa-miR-2276-5p MIMAT0026921 Homo sapiens miR-2276-5p 12 80
bta-miR-1296 MIMAT0009964 Bos taurus miR-1296 12 80
bta-miR-328 MIMAT0009287 Bos taurus miR-328 12 80
ptr-miR-328 MIMAT0008100 Pan troglodytes miR-328 12 80
ptr-miR-1296 MIMAT0008015 Pan troglodytes miR-1296 12 80
cfa-miR-328 MIMAT0006688 Canis familiaris miR-328 12 80
mml-miR-296-5p MIMAT0006251 Macaca mulatta miR-296-5p 12 80
gga-miR-1785 MIMAT0007697 Gallus gallus miR-1785 12 80
gga-miR-1763 MIMAT0007670 Gallus gallus miR-1763 12 80
odi-miR-1483-3p MIMAT0006036 Oikopleura dioica miR-1483-3p 12 80
hsa-miR-1470 MIMAT0007348 Homo sapiens miR-1470 12 80
oan-miR-1421y-5p MIMAT0007244 Ornithorhynchus anatinus miR-1421y-5p 12 80
hsa-miR-1226-5p MIMAT0005576 Homo sapiens miR-1226-5p 12 80
hsa-miR-1296-5p MIMAT0005794 Homo sapiens miR-1296-5p 12 80
rno-miR-296-5p MIMAT0000898 Rattus norvegicus miR-296-5p 12 80
hsa-miR-328-3p MIMAT0000752 Homo sapiens miR-328-3p 12 80
hsa-miR-296-5p MIMAT0000690 Homo sapiens miR-296-5p 12 80
mmu-miR-328-3p MIMAT0000565 Mus musculus miR-328-3p 12 80
rno-miR-328a-3p MIMAT0000564 Rattus norvegicus miR-328a-3p 12 80
mmu-miR-296-5p MIMAT0000374 Mus musculus miR-296-5p 12 80
>ppc-miR-8218b-5p MIMAT0033248 Pristionchus pacificus
miR-8218b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggccctc 7
|||||||
Sbjct: 8 ggccctc 2
>bdi-miR7723a-3p MIMAT0030173 Brachypodium distachyon
miR7723a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggccctc 7
|||||||
Sbjct: 7 ggccctc 1
>mdo-miR-7325-5p MIMAT0028650 Monodelphis domestica miR-7325-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggccctc 7
|||||||
Sbjct: 7 ggccctc 1
>aca-miR-5452-5p MIMAT0022075 Anolis carolinensis miR-5452-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggccctc 7
|||||||
Sbjct: 2 ggccctc 8
>ssc-miR-296-5p MIMAT0017952 Sus scrofa miR-296-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggccctc 7
|||||||
Sbjct: 7 ggccctc 1
>bta-miR-296-5p MIMAT0026918 Bos taurus miR-296-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggccctc 7
|||||||
Sbjct: 7 ggccctc 1
>mdv1-miR-M12-5p MIMAT0009209 Mareks disease miR-M12-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggccctc 7
|||||||
Sbjct: 2 ggccctc 8
>oan-miR-1363-5p MIMAT0007025 Ornithorhynchus anatinus
miR-1363-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggccctc 7
|||||||
Sbjct: 7 ggccctc 1
>ame-miR-9894 MIMAT0037299 Apis mellifera miR-9894
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>tch-miR-328 MIMAT0036581 Tupaia chinensis miR-328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>chi-miR-328-3p MIMAT0036139 Capra hircus miR-328-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>chi-miR-1296 MIMAT0035938 Capra hircus miR-1296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>bdi-miR9488 MIMAT0035495 Brachypodium distachyon miR9488
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 7 gccctc 2
>gsa-miR-281-5p MIMAT0035268 Gyrodactylus salaris miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 8 gccctc 3
>eca-miR-9114 MIMAT0034663 Equus caballus miR-9114
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>cfa-miR-1296 MIMAT0034413 Canis familiaris miR-1296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>gra-miR8699 MIMAT0034080 Gossypium raimondii miR8699
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>ppc-miR-8260-3p MIMAT0032990 Pristionchus pacificus miR-8260-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 8 gccctc 3
>ppc-miR-8226-5p MIMAT0032896 Pristionchus pacificus miR-8226-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>ssa-miR-8159-3p MIMAT0032743 Salmo salar miR-8159-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>hsa-miR-7843-5p MIMAT0030411 Homo sapiens miR-7843-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>mmu-miR-6955-5p MIMAT0027810 Mus musculus miR-6955-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>mmu-miR-6923-5p MIMAT0027746 Mus musculus miR-6923-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 8 gccctc 3
>hsa-miR-6877-5p MIMAT0027654 Homo sapiens miR-6877-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>mmu-miR-6395 MIMAT0025146 Mus musculus miR-6395
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>mmu-miR-6337 MIMAT0025080 Mus musculus miR-6337
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 7 gccctc 2
>bta-miR-3141 MIMAT0024573 Bos taurus miR-3141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>ppy-miR-2278 MIMAT0024406 Pongo pygmaeus miR-2278
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>mml-miR-1296-5p MIMAT0024328 Macaca mulatta miR-1296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>ggo-miR-1291 MIMAT0024208 Gorilla gorilla miR-1291
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>ggo-miR-1296 MIMAT0024172 Gorilla gorilla miR-1296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>ggo-miR-328 MIMAT0024166 Gorilla gorilla miR-328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>cgr-miR-328 MIMAT0023914 Cricetulus griseus miR-328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>mmu-miR-5621-3p MIMAT0022370 Mus musculus miR-5621-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>bfl-miR-4889a MIMAT0020476 Branchiostoma floridae miR-4889a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>bfl-miR-34c MIMAT0020451 Branchiostoma floridae miR-34c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccctc 7
||||||
Sbjct: 1 gccctc 6
>hsa-miR-4761-3p MIMAT0019909 Homo sapiens miR-4761-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>hsa-miR-4726-5p MIMAT0019845 Homo sapiens miR-4726-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>hsa-miR-4721 MIMAT0019835 Homo sapiens miR-4721
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 7 gccctc 2
>hsa-miR-4687-5p MIMAT0019774 Homo sapiens miR-4687-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccctc 7
||||||
Sbjct: 3 gccctc 8
>hsa-miR-4632-5p MIMAT0022977 Homo sapiens miR-4632-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>hsa-miR-3918 MIMAT0018192 Homo sapiens miR-3918
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>ssc-miR-1296-5p MIMAT0022964 Sus scrofa miR-1296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>rno-miR-328b-3p MIMAT0017904 Rattus norvegicus miR-328b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>ppy-miR-1296 MIMAT0016217 Pongo pygmaeus miR-1296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>ppy-miR-328 MIMAT0015831 Pongo pygmaeus miR-328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>ppy-miR-296-5p MIMAT0015809 Pongo pygmaeus miR-296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>hsa-miR-3141 MIMAT0015010 Homo sapiens miR-3141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>api-miR-3042 MIMAT0014780 Acyrthosiphon pisum miR-3042
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>ssc-miR-328 MIMAT0013949 Sus scrofa miR-328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>eca-miR-328 MIMAT0012929 Equus caballus miR-328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>eca-miR-1296 MIMAT0012890 Equus caballus miR-1296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>bta-miR-2467-3p MIMAT0012057 Bos taurus miR-2467-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>bta-miR-2443 MIMAT0012018 Bos taurus miR-2443
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 7 gccctc 2
>hsa-miR-2276-5p MIMAT0026921 Homo sapiens miR-2276-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccctc 7
||||||
Sbjct: 1 gccctc 6
>bta-miR-1296 MIMAT0009964 Bos taurus miR-1296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>bta-miR-328 MIMAT0009287 Bos taurus miR-328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>ptr-miR-328 MIMAT0008100 Pan troglodytes miR-328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>ptr-miR-1296 MIMAT0008015 Pan troglodytes miR-1296
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>cfa-miR-328 MIMAT0006688 Canis familiaris miR-328
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>mml-miR-296-5p MIMAT0006251 Macaca mulatta miR-296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>gga-miR-1785 MIMAT0007697 Gallus gallus miR-1785
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 7 gccctc 2
>gga-miR-1763 MIMAT0007670 Gallus gallus miR-1763
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 6 gccctc 1
>odi-miR-1483-3p MIMAT0006036 Oikopleura dioica miR-1483-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>hsa-miR-1470 MIMAT0007348 Homo sapiens miR-1470
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gccctc 7
||||||
Sbjct: 1 gccctc 6
>oan-miR-1421y-5p MIMAT0007244 Ornithorhynchus anatinus
miR-1421y-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 8 gccctc 3
>hsa-miR-1226-5p MIMAT0005576 Homo sapiens miR-1226-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gccctc 7
||||||
Sbjct: 8 gccctc 3
>hsa-miR-1296-5p MIMAT0005794 Homo sapiens miR-1296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 8 ggccct 3
>rno-miR-296-5p MIMAT0000898 Rattus norvegicus miR-296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>hsa-miR-328-3p MIMAT0000752 Homo sapiens miR-328-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>hsa-miR-296-5p MIMAT0000690 Homo sapiens miR-296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
>mmu-miR-328-3p MIMAT0000565 Mus musculus miR-328-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>rno-miR-328a-3p MIMAT0000564 Rattus norvegicus miR-328a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ggccct 6
||||||
Sbjct: 3 ggccct 8
>mmu-miR-296-5p MIMAT0000374 Mus musculus miR-296-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ggccct 6
||||||
Sbjct: 6 ggccct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 94
Number of successful extensions: 74
Number of sequences better than 100.0: 74
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 74
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
