BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-10a*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
kshv-miR-K12-10a-5p MIMAT0015212 Kaposi sarcoma-associated miR-K... 16 6.9
efu-miR-9357 MIMAT0035150 Eptesicus fuscus miR-9357 14 27
eca-miR-9025 MIMAT0034567 Equus caballus miR-9025 14 27
str-miR-7880b-1-5p MIMAT0033304 Strongyloides ratti miR-7880b-1-5p 14 27
bdi-miR7767-5p MIMAT0030282 Brachypodium distachyon miR7767-5p 14 27
cin-miR-4057-5p MIMAT0016603 Ciona intestinalis miR-4057-5p 14 27
mtr-miR2621 MIMAT0013341 Medicago truncatula miR2621 14 27
ath-miR778 MIMAT0003937 Arabidopsis thaliana miR778 14 27
osa-miR168b MIMAT0001046 Oryza sativa miR168b 14 27
>kshv-miR-K12-10a-5p MIMAT0015212 Kaposi sarcoma-associated
miR-K12-10a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ggcttggg 8
||||||||
Sbjct: 1 ggcttggg 8
>efu-miR-9357 MIMAT0035150 Eptesicus fuscus miR-9357
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggcttgg 7
|||||||
Sbjct: 8 ggcttgg 2
>eca-miR-9025 MIMAT0034567 Equus caballus miR-9025
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcttgg 7
|||||||
Sbjct: 2 ggcttgg 8
>str-miR-7880b-1-5p MIMAT0033304 Strongyloides ratti
miR-7880b-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcttgg 7
|||||||
Sbjct: 2 ggcttgg 8
>bdi-miR7767-5p MIMAT0030282 Brachypodium distachyon miR7767-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcttggg 8
|||||||
Sbjct: 8 gcttggg 2
>cin-miR-4057-5p MIMAT0016603 Ciona intestinalis miR-4057-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcttgg 7
|||||||
Sbjct: 1 ggcttgg 7
>mtr-miR2621 MIMAT0013341 Medicago truncatula miR2621
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcttggg 8
|||||||
Sbjct: 2 gcttggg 8
>ath-miR778 MIMAT0003937 Arabidopsis thaliana miR778
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcttgg 7
|||||||
Sbjct: 2 ggcttgg 8
>osa-miR168b MIMAT0001046 Oryza sativa miR168b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggcttgg 7
|||||||
Sbjct: 2 ggcttgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 140
Number of extensions: 130
Number of successful extensions: 112
Number of sequences better than 100.0: 9
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
