BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h5*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-409-5p MIMAT0036209 Capra hircus miR-409-5p 16 6.9
ggo-miR-409 MIMAT0024170 Gorilla gorilla miR-409 16 6.9
cgr-miR-409-5p MIMAT0023950 Cricetulus griseus miR-409-5p 16 6.9
oar-miR-409-5p MIMAT0019327 Ovis aries miR-409-5p 16 6.9
ppy-miR-409-5p MIMAT0015875 Pongo pygmaeus miR-409-5p 16 6.9
eca-miR-409-5p MIMAT0013151 Equus caballus miR-409-5p 16 6.9
hvt-miR-H5-3p MIMAT0012717 Herpesvirus of miR-H5-3p 16 6.9
bta-miR-409a MIMAT0009310 Bos taurus miR-409a 16 6.9
mml-miR-409-5p MIMAT0006314 Macaca mulatta miR-409-5p 16 6.9
rno-miR-409a-5p MIMAT0003204 Rattus norvegicus miR-409a-5p 16 6.9
hsa-miR-409-5p MIMAT0001638 Homo sapiens miR-409-5p 16 6.9
mmu-miR-409-5p MIMAT0004746 Mus musculus miR-409-5p 16 6.9
efu-miR-9210 MIMAT0034801 Eptesicus fuscus miR-9210 14 27
ppc-miR-8227-5p MIMAT0032898 Pristionchus pacificus miR-8227-5p 14 27
cgr-miR-872-5p MIMAT0024005 Cricetulus griseus miR-872-5p 14 27
eca-miR-872 MIMAT0013119 Equus caballus miR-872 14 27
oan-miR-1421al-5p MIMAT0007311 Ornithorhynchus anatinus miR-1421... 14 27
oan-miR-1421c-5p MIMAT0006967 Ornithorhynchus anatinus miR-1421c-5p 14 27
oan-miR-1421a-5p MIMAT0006963 Ornithorhynchus anatinus miR-1421a-5p 14 27
rno-miR-872-5p MIMAT0005282 Rattus norvegicus miR-872-5p 14 27
mmu-miR-872-5p MIMAT0004934 Mus musculus miR-872-5p 14 27
>chi-miR-409-5p MIMAT0036209 Capra hircus miR-409-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>ggo-miR-409 MIMAT0024170 Gorilla gorilla miR-409
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>cgr-miR-409-5p MIMAT0023950 Cricetulus griseus miR-409-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>oar-miR-409-5p MIMAT0019327 Ovis aries miR-409-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>ppy-miR-409-5p MIMAT0015875 Pongo pygmaeus miR-409-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>eca-miR-409-5p MIMAT0013151 Equus caballus miR-409-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>hvt-miR-H5-3p MIMAT0012717 Herpesvirus of miR-H5-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ggtaacct 8
||||||||
Sbjct: 1 ggtaacct 8
>bta-miR-409a MIMAT0009310 Bos taurus miR-409a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>mml-miR-409-5p MIMAT0006314 Macaca mulatta miR-409-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>rno-miR-409a-5p MIMAT0003204 Rattus norvegicus miR-409a-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>hsa-miR-409-5p MIMAT0001638 Homo sapiens miR-409-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>mmu-miR-409-5p MIMAT0004746 Mus musculus miR-409-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ggtaacct 8
||||||||
Sbjct: 8 ggtaacct 1
>efu-miR-9210 MIMAT0034801 Eptesicus fuscus miR-9210
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ggtaacc 7
|||||||
Sbjct: 8 ggtaacc 2
>ppc-miR-8227-5p MIMAT0032898 Pristionchus pacificus miR-8227-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ggtaacc 7
|||||||
Sbjct: 2 ggtaacc 8
>cgr-miR-872-5p MIMAT0024005 Cricetulus griseus miR-872-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtaacct 8
|||||||
Sbjct: 8 gtaacct 2
>eca-miR-872 MIMAT0013119 Equus caballus miR-872
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtaacct 8
|||||||
Sbjct: 8 gtaacct 2
>oan-miR-1421al-5p MIMAT0007311 Ornithorhynchus anatinus
miR-1421al-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtaacct 8
|||||||
Sbjct: 8 gtaacct 2
>oan-miR-1421c-5p MIMAT0006967 Ornithorhynchus anatinus
miR-1421c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtaacct 8
|||||||
Sbjct: 8 gtaacct 2
>oan-miR-1421a-5p MIMAT0006963 Ornithorhynchus anatinus
miR-1421a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtaacct 8
|||||||
Sbjct: 8 gtaacct 2
>rno-miR-872-5p MIMAT0005282 Rattus norvegicus miR-872-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtaacct 8
|||||||
Sbjct: 8 gtaacct 2
>mmu-miR-872-5p MIMAT0004934 Mus musculus miR-872-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gtaacct 8
|||||||
Sbjct: 8 gtaacct 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 121
Number of extensions: 88
Number of successful extensions: 70
Number of sequences better than 100.0: 21
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
