VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= kshv-miR-k12-5*
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-7076-3p MIMAT0028059 Mus musculus miR-7076-3p                  14      20
vvi-miR3626-5p MIMAT0018015 Vitis vinifera miR3626-5p                  14      20
kshv-miR-K12-5-5p MIMAT0015218 Kaposi sarcoma-associated miR-K12...    14      20
oha-miR-196c-5p MIMAT0036787 Ophiophagus hannah miR-196c-5p            12      80
oha-miR-196b-5p MIMAT0036785 Ophiophagus hannah miR-196b-5p            12      80
oha-miR-196a-5p MIMAT0036783 Ophiophagus hannah miR-196a-5p            12      80
tch-miR-196a-5p MIMAT0036623 Tupaia chinensis miR-196a-5p              12      80
chi-miR-196b MIMAT0036033 Capra hircus miR-196b                        12      80
chi-miR-196a MIMAT0036032 Capra hircus miR-196a                        12      80
bra-miR860-5p MIMAT0035860 Brassica rapa miR860-5p                     12      80
efu-miR-196 MIMAT0035121 Eptesicus fuscus miR-196                      12      80
eca-miR-9093 MIMAT0034638 Equus caballus miR-9093                      12      80
ssa-miR-196b-5p MIMAT0032458 Salmo salar miR-196b-5p                   12      80
ssa-miR-196a-5p MIMAT0032453 Salmo salar miR-196a-5p                   12      80
hhi-miR-196 MIMAT0030357 Hippoglossus hippoglossus miR-196             12      80
bdi-miR7757-3p.1 MIMAT0030261 Brachypodium distachyon miR7757-3p.1     12      80
ipu-miR-196d MIMAT0029449 Ictalurus punctatus miR-196d                 12      80
ipu-miR-196a MIMAT0029448 Ictalurus punctatus miR-196a                 12      80
ghr-miR7507 MIMAT0029154 Gossypium hirsutum miR7507                    12      80
mdo-miR-196a-5p MIMAT0028494 Monodelphis domestica miR-196a-5p         12      80
ccr-miR-196b MIMAT0026254 Cyprinus carpio miR-196b                     12      80
ccr-miR-196a MIMAT0026253 Cyprinus carpio miR-196a                     12      80
mmu-miR-6921-3p MIMAT0027743 Mus musculus miR-6921-3p                  12      80
tgu-miR-196 MIMAT0025394 Taeniopygia guttata miR-196                   12      80
cgr-miR-196c MIMAT0023834 Cricetulus griseus miR-196c                  12      80
cgr-miR-196b MIMAT0023833 Cricetulus griseus miR-196b                  12      80
cgr-miR-196a-5p MIMAT0023831 Cricetulus griseus miR-196a-5p            12      80
hsa-miR-6073 MIMAT0023698 Homo sapiens miR-6073                        12      80
hco-miR-5989 MIMAT0023505 Haemonchus contortus miR-5989                12      80
ola-miR-196a MIMAT0022564 Oryzias latipes miR-196a                     12      80
rgl-miR5573 MIMAT0022998 Rehmannia glutinosa miR5573