BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-11*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dvi-miR-9548-3p MIMAT0035639 Drosophila virilis miR-9548-3p 14 20
mmu-miR-3100-3p MIMAT0014920 Mus musculus miR-3100-3p 14 20
eca-miR-301b-5p MIMAT0013000 Equus caballus miR-301b-5p 14 20
gga-miR-1664-3p MIMAT0007547 Gallus gallus miR-1664-3p 14 20
gga-miR-1574-5p MIMAT0007434 Gallus gallus miR-1574-5p 14 20
kshv-miR-K12-11-5p MIMAT0015213 Kaposi sarcoma-associated miR-K1... 14 20
ssc-miR-9843-3p MIMAT0037061 Sus scrofa miR-9843-3p 12 80
oha-miR-128-3p MIMAT0036679 Ophiophagus hannah miR-128-3p 12 80
tch-miR-542-3p MIMAT0036613 Tupaia chinensis miR-542-3p 12 80
tch-miR-128 MIMAT0036541 Tupaia chinensis miR-128 12 80
chi-miR-758 MIMAT0036292 Capra hircus miR-758 12 80
chi-miR-542-3p MIMAT0036273 Capra hircus miR-542-3p 12 80
chi-miR-134 MIMAT0035951 Capra hircus miR-134 12 80
chi-miR-128-3p MIMAT0035934 Capra hircus miR-128-3p 12 80
tae-miR396-5p MIMAT0035771 Triticum aestivum miR396-5p 12 80
hco-miR-9551 MIMAT0035652 Haemonchus contortus miR-9551 12 80
gsa-miR-2d-3p MIMAT0035299 Gyrodactylus salaris miR-2d-3p 12 80
gsa-miR-2c-3p MIMAT0035277 Gyrodactylus salaris miR-2c-3p 12 80
gsa-miR-2b-3p MIMAT0035273 Gyrodactylus salaris miR-2b-3p 12 80
gsa-miR-2a-3p MIMAT0035267 Gyrodactylus salaris miR-2a-3p 12 80
efu-miR-128b MIMAT0035005 Eptesicus fuscus miR-128b 12 80
efu-miR-128a MIMAT0034922 Eptesicus fuscus miR-128a 12 80
efu-miR-27b MIMAT0034900 Eptesicus fuscus miR-27b 12 80
eca-miR-9089 MIMAT0034634 Equus caballus miR-9089 12 80
gra-miR8760 MIMAT0034190 Gossypium raimondii miR8760 12 80
atr-miR8585 MIMAT0033871 Amborella trichopoda miR8585 12 80
pxy-miR-274 MIMAT0033814 Plutella xylostella miR-274 12 80
pxy-miR-2b MIMAT0033803 Plutella xylostella miR-2b 12 80
pxy-miR-8524-3p MIMAT0033766 Plutella xylostella miR-8524-3p 12 80
pxy-miR-2a-3p MIMAT0033718 Plutella xylostella miR-2a-3p 12 80
sma-miR-2f-3p MIMAT0033691 Schistosoma mansoni miR-2f-3p 12 80
str-miR-2-3p MIMAT0033475 Strongyloides ratti miR-2-3p 12 80
str-miR-7880k-3p MIMAT0033359 Strongyloides ratti miR-7880k-3p 12 80
ppc-miR-8235-5p MIMAT0032924 Pristionchus pacificus miR-8235-5p 12 80
ppc-miR-2a-3p MIMAT0032873 Pristionchus pacificus miR-2a-3p 12 80
ssa-miR-128-3p MIMAT0032314 Salmo salar miR-128-3p 12 80
bma-miR-2d MIMAT0031747 Brugia malayi miR-2d 12 80
bma-miR-250 MIMAT0031743 Brugia malayi miR-250 12 80
hsa-miR-7973 MIMAT0031176 Homo sapiens miR-7973 12 80
prd-miR-2-3p MIMAT0030559 Panagrellus redivivus miR-2-3p 12 80
cbn-miR-249 MIMAT0029766 Caenorhabditis brenneri miR-249 12 80
cbn-miR-250 MIMAT0029725 Caenorhabditis brenneri miR-250 12 80
cbn-miR-43 MIMAT0029724 Caenorhabditis brenneri miR-43 12 80
cbn-miR-2 MIMAT0029723 Caenorhabditis brenneri miR-2 12 80
cbr-miR-2 MIMAT0029606 Caenorhabditis briggsae miR-2 12 80
ipu-miR-128 MIMAT0029402 Ictalurus punctatus miR-128 12 80
gga-miR-7468-5p MIMAT0029090 Gallus gallus miR-7468-5p 12 80
gga-miR-7461-5p MIMAT0029076 Gallus gallus miR-7461-5p 12 80
gga-miR-7454-5p MIMAT0029062 Gallus gallus miR-7454-5p 12 80
mdo-miR-7394b-3p MIMAT0028895 Monodelphis domestica miR-7394b-3p 12 80
mdo-miR-7393-3p MIMAT0028885 Monodelphis domestica miR-7393-3p 12 80
mdo-miR-128b-3p MIMAT0028609 Monodelphis domestica miR-128b-3p 12 80
mdo-miR-7287-3p MIMAT0028557 Monodelphis domestica miR-7287-3p 12 80
mml-miR-4677-3p MIMAT0028307 Macaca mulatta miR-4677-3p 12 80
dev-miR-D22-3p MIMAT0028199 Duck enteritis miR-D22-3p 12 80
bma-miR-5870 MIMAT0026369 Brugia malayi miR-5870 12 80
ccr-miR-128 MIMAT0026208 Cyprinus carpio miR-128 12 80
mmu-miR-6937-3p MIMAT0027775 Mus musculus miR-6937-3p 12 80
hsa-miR-6820-3p MIMAT0027541 Homo sapiens miR-6820-3p 12 80
gga-miR-6696-5p MIMAT0025802 Gallus gallus miR-6696-5p 12 80
rno-miR-6329 MIMAT0025068 Rattus norvegicus miR-6329 12 80
sma-miR-2e-3p MIMAT0025037 Schistosoma mansoni miR-2e-3p 12 80
sma-miR-2d-3p MIMAT0025035 Schistosoma mansoni miR-2d-3p 12 80
sma-miR-2c-3p MIMAT0025034 Schistosoma mansoni miR-2c-3p 12 80
sma-miR-2b-3p MIMAT0025032 Schistosoma mansoni miR-2b-3p 12 80
sma-miR-2a-3p MIMAT0025030 Schistosoma mansoni miR-2a-3p 12 80
hme-miR-308 MIMAT0024977 Heliconius melpomene miR-308 12 80
hme-miR-2c MIMAT0024973 Heliconius melpomene miR-2c 12 80
hme-miR-2b MIMAT0024972 Heliconius melpomene miR-2b 12 80
hme-miR-2a MIMAT0024971 Heliconius melpomene miR-2a 12 80
hme-miR-13b MIMAT0024941 Heliconius melpomene miR-13b 12 80
hme-miR-13a MIMAT0024940 Heliconius melpomene miR-13a 12 80
hme-miR-11 MIMAT0024934 Heliconius melpomene miR-11 12 80
mse-miR-2b MIMAT0024480 Manduca sexta miR-2b 12 80
mse-miR-2a MIMAT0024479 Manduca sexta miR-2a 12 80
mse-miR-308 MIMAT0024478 Manduca sexta miR-308 12 80
mse-miR-11 MIMAT0024422 Manduca sexta miR-11 12 80
ggo-miR-542 MIMAT0024231 Gorilla gorilla miR-542 12 80
ggo-miR-128 MIMAT0024082 Gorilla gorilla miR-128 12 80
ptr-miR-4504 MIMAT0024065 Pan troglodytes miR-4504 12 80
cgr-miR-542-3p MIMAT0023984 Cricetulus griseus miR-542-3p 12 80
cgr-miR-134 MIMAT0023760 Cricetulus griseus miR-134 12 80
cgr-miR-128-3p MIMAT0023750 Cricetulus griseus miR-128-3p 12 80
ame-miR-6057 MIMAT0023681 Apis mellifera miR-6057 12 80
tca-miR-927b-3p MIMAT0023580 Tribolium castaneum miR-927b-3p 12 80
hco-miR-2 MIMAT0023415 Haemonchus contortus miR-2 12 80
hco-miR-43 MIMAT0023336 Haemonchus contortus miR-43 12 80
sha-miR-128 MIMAT0022798 Sarcophilus harrisii miR-128 12 80
ola-miR-128 MIMAT0022601 Oryzias latipes miR-128 12 80
tur-miR-2-3p MIMAT0023043 Tetranychus urticae miR-2-3p 12 80
aca-miR-128-3p MIMAT0021733 Anolis carolinensis miR-128-3p 12 80
asu-miR-250-3p MIMAT0021508 Ascaris suum miR-250-3p 12 80
asu-miR-43c-3p MIMAT0021454 Ascaris suum miR-43c-3p 12 80
asu-miR-43b-3p MIMAT0021452 Ascaris suum miR-43b-3p 12 80
asu-miR-43a-3p MIMAT0021450 Ascaris suum miR-43a-3p 12 80
asu-miR-43e-3p MIMAT0021436 Ascaris suum miR-43e-3p 12 80
asu-miR-43d-3p MIMAT0021434 Ascaris suum miR-43d-3p 12 80
asu-miR-2b-3p MIMAT0021428 Ascaris suum miR-2b-3p 12 80
asu-miR-2a-3p MIMAT0021426 Ascaris suum miR-2a-3p 12 80
ath-miR5013 MIMAT0020517 Arabidopsis thaliana miR5013 12 80
emu-miR-2c-3p MIMAT0020257 Echinococcus multilocularis miR-2c-3p 12 80
emu-miR-2b MIMAT0020256 Echinococcus multilocularis miR-2b 12 80
emu-miR-2a MIMAT0020255 Echinococcus multilocularis miR-2a 12 80
egr-miR-2c-3p MIMAT0020232 Echinococcus granulosus miR-2c-3p 12 80
egr-miR-2b MIMAT0020230 Echinococcus granulosus miR-2b 12 80
egr-miR-2a MIMAT0020229 Echinococcus granulosus miR-2a 12 80
hsa-miR-4679 MIMAT0019763 Homo sapiens miR-4679 12 80
hsa-miR-4677-3p MIMAT0019761 Homo sapiens miR-4677-3p 12 80
pma-miR-128 MIMAT0019449 Petromyzon marinus miR-128 12 80
oar-miR-134-5p MIMAT0019308 Ovis aries miR-134-5p 12 80
oar-miR-758-3p MIMAT0019262 Ovis aries miR-758-3p 12 80
hsa-miR-4504 MIMAT0019040 Homo sapiens miR-4504 12 80
hsa-miR-4501 MIMAT0019037 Homo sapiens miR-4501 12 80
nlo-miR-2 MIMAT0018427 Nasonia longicornis miR-2 12 80
nlo-miR-13a MIMAT0018424 Nasonia longicornis miR-13a 12 80
ngi-miR-13a MIMAT0018396 Nasonia giraulti miR-13a 12 80
ngi-miR-2 MIMAT0018393 Nasonia giraulti miR-2 12 80
gma-miR4381 MIMAT0018288 Glycine max miR4381 12 80
tca-miR-3886-5p MIMAT0018870 Tribolium castaneum miR-3886-5p 12 80
tca-miR-11-3p MIMAT0018855 Tribolium castaneum miR-11-3p 12 80
tca-miR-2944c-3p MIMAT0018811 Tribolium castaneum miR-2944c-3p 12 80
tca-miR-2944b-3p MIMAT0018747 Tribolium castaneum miR-2944b-3p 12 80
tca-miR-2944a-3p MIMAT0018719 Tribolium castaneum miR-2944a-3p 12 80
tca-miR-308-3p MIMAT0018707 Tribolium castaneum miR-308-3p 12 80
ame-miR-2944 MIMAT0018573 Apis mellifera miR-2944 12 80
ame-miR-11 MIMAT0018506 Apis mellifera miR-11 12 80
cin-miR-4141-5p MIMAT0016740 Ciona intestinalis miR-4141-5p 12 80
cin-miR-4011b-5p MIMAT0016510 Ciona intestinalis miR-4011b-5p 12 80
cin-miR-135-3p MIMAT0016410 Ciona intestinalis miR-135-3p 12 80
cin-miR-3598-5p MIMAT0016399 Ciona intestinalis miR-3598-5p 12 80
sja-miR-2e-3p MIMAT0016295 Schistosoma japonicum miR-2e-3p 12 80
sja-miR-2d-3p MIMAT0016279 Schistosoma japonicum miR-2d-3p 12 80
sja-miR-2c-3p MIMAT0016277 Schistosoma japonicum miR-2c-3p 12 80
sja-miR-2b-3p MIMAT0016248 Schistosoma japonicum miR-2b-3p 12 80
sja-miR-2a-3p MIMAT0016246 Schistosoma japonicum miR-2a-3p 12 80
ppy-miR-758 MIMAT0016103 Pongo pygmaeus miR-758 12 80
ppy-miR-542-3p MIMAT0015992 Pongo pygmaeus miR-542-3p 12 80
ssc-miR-758 MIMAT0015719 Sus scrofa miR-758 12 80
nvi-miR-2b MIMAT0015667 Nasonia vitripennis miR-2b 12 80
nvi-miR-2a MIMAT0015666 Nasonia vitripennis miR-2a 12 80
nvi-miR-13b MIMAT0015665 Nasonia vitripennis miR-13b 12 80
nvi-miR-13a MIMAT0015664 Nasonia vitripennis miR-13a 12 80
nvi-miR-2c MIMAT0015663 Nasonia vitripennis miR-2c 12 80
aly-miR3433-3p MIMAT0017686 Arabidopsis lyrata miR3433-3p 12 80
bmo-miR-3264 MIMAT0015448 Bombyx mori miR-3264 12 80
hsa-miR-3164 MIMAT0015038 Homo sapiens miR-3164 12 80
hsa-miR-3118 MIMAT0014980 Homo sapiens miR-3118 12 80
api-miR-2b MIMAT0014821 Acyrthosiphon pisum miR-2b 12 80
api-miR-2a MIMAT0014727 Acyrthosiphon pisum miR-2a 12 80
api-miR-13a MIMAT0014713 Acyrthosiphon pisum miR-13a 12 80
tgu-m
