BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bhv1-miR-b6*
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

eca-miR-9167 MIMAT0034745 Equus caballus miR-9167                      14      20
hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091                        14      20
bhv1-miR-B6-3p MIMAT0013968 Bovine herpesvirus miR-B6-3p               14      20
mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p                 14      20
mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112                        12      80
ssc-miR-7142-5p MIMAT0028159 Sus scrofa miR-7142-5p                    12      80
mmu-miR-6913-5p MIMAT0027726 Mus musculus miR-6913-5p                  12      80
bta-miR-3957 MIMAT0025548 Bos taurus miR-3957                          12      80
pde-miR949b MIMAT0025341 Pinus densata miR949b                         12      80
ptc-miR6426b MIMAT0025259 Populus trichocarpa miR6426b                 12      80
ptc-miR6426a MIMAT0025221 Populus trichocarpa miR6426a                 12      80
ggo-miR-3615 MIMAT0024281 Gorilla gorilla miR-3615                     12      80
hco-miR-5918a MIMAT0023391 Haemonchus contortus miR-5918a              12      80
rgl-miR5137 MIMAT0020648 Rehmannia glutinosa miR5137                   12      80
dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster miR-4955-5p       12      80
pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p              12      80
oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p                    12      80
ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746                      12      80
ppy-miR-139-3p MIMAT0015762 Pongo pygmaeus miR-139-3p                  12      80
aly-miR859-5p MIMAT0017647 Arabidopsis lyrata miR859-5p                12      80
eca-miR-769a-5p MIMAT0013015 Equus caballus miR-769a-5p                12      80
eca-miR-139-3p MIMAT0012984 Equus caballus miR-139-3p                  12      80
iltv-miR-I6-5p MIMAT0012730 Infectious laryngotracheitis miR-I6-5p     12      80
ptr-miR-139 MIMAT0008035 Pan troglodytes miR-139                       12      80
mml-miR-139-3p MIMAT0006196 Macaca mulatta miR-139-3p                  12      80
gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713                       12      80
cin-miR-281-5p MIMAT0015265 Ciona intestinalis miR-281-5p              12      80
oan-miR-1403 MIMAT0007210 Ornithorhynchus anatinus miR-1403            12      80
ppt-miR1039-3p MIMAT0005149 Physcomitrella patens miR1039-3p           12      80
pta-miR949 MIMAT0005009 Pinus taeda miR949                             12      80
hsa-miR-873-3p MIMAT0022717 Homo sapiens miR-873-3p                    12      80
>eca-miR-9167 MIMAT0034745 Equus caballus miR-9167
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtctccg 7
         |||||||
Sbjct: 2 gtctccg 8
>hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtctccg 7
         |||||||
Sbjct: 8 gtctccg 2
>bhv1-miR-B6-3p MIMAT0013968 Bovine herpesvirus miR-B6-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtctccg 7
         |||||||
Sbjct: 2 gtctccg 8
>mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtctccg 7
         |||||||
Sbjct: 1 gtctccg 7
>mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 1 tctccg 6
>ssc-miR-7142-5p MIMAT0028159 Sus scrofa miR-7142-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 3 tctccg 8
>mmu-miR-6913-5p MIMAT0027726 Mus musculus miR-6913-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 8 gtctcc 3
>bta-miR-3957 MIMAT0025548 Bos taurus miR-3957
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 8 tctccg 3
>pde-miR949b MIMAT0025341 Pinus densata miR949b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 1 tctccg 6
>ptc-miR6426b MIMAT0025259 Populus trichocarpa miR6426b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 8 gtctcc 3
>ptc-miR6426a MIMAT0025221 Populus trichocarpa miR6426a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 8 gtctcc 3
>ggo-miR-3615 MIMAT0024281 Gorilla gorilla miR-3615
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 3 tctccg 8
>hco-miR-5918a MIMAT0023391 Haemonchus contortus miR-5918a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 3 gtctcc 8
>rgl-miR5137 MIMAT0020648 Rehmannia glutinosa miR5137
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 8 tctccg 3
>dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster
         miR-4955-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 8 tctccg 3
>pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 8 tctccg 3
>oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 8 tctccg 3
>ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 8 tctccg 3
>ppy-miR-139-3p MIMAT0015762 Pongo pygmaeus miR-139-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 6 gtctcc 1
>aly-miR859-5p MIMAT0017647 Arabidopsis lyrata miR859-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 3 tctccg 8
>eca-miR-769a-5p MIMAT0013015 Equus caballus miR-769a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 6 gtctcc 1
>eca-miR-139-3p MIMAT0012984 Equus caballus miR-139-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 6 gtctcc 1
>iltv-miR-I6-5p MIMAT0012730 Infectious laryngotracheitis
         miR-I6-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 1 gtctcc 6
>ptr-miR-139 MIMAT0008035 Pan troglodytes miR-139
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 6 gtctcc 1
>mml-miR-139-3p MIMAT0006196 Macaca mulatta miR-139-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 6 gtctcc 1
>gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 8 tctccg 3
>cin-miR-281-5p MIMAT0015265 Ciona intestinalis miR-281-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 6 tctccg 1
>oan-miR-1403 MIMAT0007210 Ornithorhynchus anatinus miR-1403
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 1 gtctcc 6
>ppt-miR1039-3p MIMAT0005149 Physcomitrella patens miR1039-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 8 gtctcc 3
>pta-miR949 MIMAT0005009 Pinus taeda miR949
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tctccg 7
         ||||||
Sbjct: 1 tctccg 6
>hsa-miR-873-3p MIMAT0022717 Homo sapiens miR-873-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 gtctcc 6
         ||||||
Sbjct: 6 gtctcc 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 57
Number of extensions: 53
Number of successful extensions: 31
Number of sequences better than 100.0: 31
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 31
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)