BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= iltv-miR-i6*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
iltv-miR-I6-5p MIMAT0012730 Infectious laryngotracheitis miR-I6-5p 16 6.9
ata-miR1432-5p MIMAT0037214 Aegilops tauschii miR1432-5p 14 27
eca-miR-9076 MIMAT0034621 Equus caballus miR-9076 14 27
atr-miR8602 MIMAT0033891 Amborella trichopoda miR8602 14 27
mmu-miR-8113 MIMAT0031419 Mus musculus miR-8113 14 27
mmu-miR-8103 MIMAT0031407 Mus musculus miR-8103 14 27
hhi-miR-7795 MIMAT0030342 Hippoglossus hippoglossus miR-7795 14 27
mmu-miR-7057-5p MIMAT0028018 Mus musculus miR-7057-5p 14 27
mmu-miR-7050-5p MIMAT0028004 Mus musculus miR-7050-5p 14 27
mmu-miR-7037-3p MIMAT0027979 Mus musculus miR-7037-3p 14 27
hsa-miR-4768-3p MIMAT0019921 Homo sapiens miR-4768-3p 14 27
mml-miR-936 MIMAT0006537 Macaca mulatta miR-936 14 27
mml-miR-650d MIMAT0006491 Macaca mulatta miR-650d 14 27
>iltv-miR-I6-5p MIMAT0012730 Infectious laryngotracheitis
miR-I6-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 gtctcctg 8
||||||||
Sbjct: 1 gtctcctg 8
>ata-miR1432-5p MIMAT0037214 Aegilops tauschii miR1432-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctcctg 8
|||||||
Sbjct: 8 tctcctg 2
>eca-miR-9076 MIMAT0034621 Equus caballus miR-9076
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctcctg 8
|||||||
Sbjct: 1 tctcctg 7
>atr-miR8602 MIMAT0033891 Amborella trichopoda miR8602
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctcctg 8
|||||||
Sbjct: 8 tctcctg 2
>mmu-miR-8113 MIMAT0031419 Mus musculus miR-8113
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctcctg 8
|||||||
Sbjct: 7 tctcctg 1
>mmu-miR-8103 MIMAT0031407 Mus musculus miR-8103
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctcctg 8
|||||||
Sbjct: 1 tctcctg 7
>hhi-miR-7795 MIMAT0030342 Hippoglossus hippoglossus miR-7795
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtctcct 7
|||||||
Sbjct: 7 gtctcct 1
>mmu-miR-7057-5p MIMAT0028018 Mus musculus miR-7057-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctcctg 8
|||||||
Sbjct: 7 tctcctg 1
>mmu-miR-7050-5p MIMAT0028004 Mus musculus miR-7050-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctcctg 8
|||||||
Sbjct: 8 tctcctg 2
>mmu-miR-7037-3p MIMAT0027979 Mus musculus miR-7037-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gtctcct 7
|||||||
Sbjct: 2 gtctcct 8
>hsa-miR-4768-3p MIMAT0019921 Homo sapiens miR-4768-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctcctg 8
|||||||
Sbjct: 8 tctcctg 2
>mml-miR-936 MIMAT0006537 Macaca mulatta miR-936
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctcctg 8
|||||||
Sbjct: 8 tctcctg 2
>mml-miR-650d MIMAT0006491 Macaca mulatta miR-650d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gtctcct 7
|||||||
Sbjct: 7 gtctcct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 171
Number of extensions: 157
Number of successful extensions: 123
Number of sequences better than 100.0: 13
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
