BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ebv-miR-bart5*
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mmu-miR-7655-5p MIMAT0029816 Mus musculus miR-7655-5p                  16   6.9  
ebv-miR-BART5-3p MIMAT0009205 Epstein Barr miR-BART5-3p                16   6.9  
gra-miR8757a MIMAT0034186 Gossypium raimondii miR8757a                 14      27
ppc-miR-8343-3p MIMAT0033232 Pristionchus pacificus miR-8343-3p        14      27
mdo-miR-7386k-5p MIMAT0028848 Monodelphis domestica miR-7386k-5p       14      27
hsa-miR-6075 MIMAT0023700 Homo sapiens miR-6075                        14      27
osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2                      14      27
rno-miR-770-3p MIMAT0017317 Rattus norvegicus miR-770-3p               14      27
mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p                    14      27
rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus miR-rL1-...    14      27
rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus miR-rL1-...    14      27
>mmu-miR-7655-5p MIMAT0029816 Mus musculus miR-7655-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 gtgggccg 8
         ||||||||
Sbjct: 8 gtgggccg 1
>ebv-miR-BART5-3p MIMAT0009205 Epstein Barr miR-BART5-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 gtgggccg 8
         ||||||||
Sbjct: 1 gtgggccg 8
>gra-miR8757a MIMAT0034186 Gossypium raimondii miR8757a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgggccg 8
         |||||||
Sbjct: 1 tgggccg 7
>ppc-miR-8343-3p MIMAT0033232 Pristionchus pacificus miR-8343-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgggccg 8
         |||||||
Sbjct: 2 tgggccg 8
>mdo-miR-7386k-5p MIMAT0028848 Monodelphis domestica
         miR-7386k-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgggcc 7
         |||||||
Sbjct: 2 gtgggcc 8
>hsa-miR-6075 MIMAT0023700 Homo sapiens miR-6075
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tgggccg 8
         |||||||
Sbjct: 8 tgggccg 2
>osa-miR1847.2 MIMAT0007767 Oryza sativa miR1847.2
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 gtgggcc 7
         |||||||
Sbjct: 8 gtgggcc 2
>rno-miR-770-3p MIMAT0017317 Rattus norvegicus miR-770-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgggcc 7
         |||||||
Sbjct: 1 gtgggcc 7
>mmu-miR-770-3p MIMAT0003891 Mus musculus miR-770-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgggcc 7
         |||||||
Sbjct: 2 gtgggcc 8
>rlcv-miR-rL1-8-3p MIMAT0019087 Rhesus lymphocryptovirus
         miR-rL1-8-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgggcc 7
         |||||||
Sbjct: 2 gtgggcc 8
>rlcv-miR-rL1-7-3p MIMAT0019086 Rhesus lymphocryptovirus
         miR-rL1-7-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 gtgggcc 7
         |||||||
Sbjct: 2 gtgggcc 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 144
Number of extensions: 131
Number of successful extensions: 109
Number of sequences better than 100.0: 11
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)