BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m01-2*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mcmv-miR-m01-2-3p MIMAT0005535 Mouse cytomegalovirus miR-m01-2-3p 14 20
osa-miR439i MIMAT0001598 Oryza sativa miR439i 14 20
osa-miR439h MIMAT0001596 Oryza sativa miR439h 14 20
osa-miR439g MIMAT0001595 Oryza sativa miR439g 14 20
osa-miR439f MIMAT0001594 Oryza sativa miR439f 14 20
osa-miR439e MIMAT0001593 Oryza sativa miR439e 14 20
osa-miR439d MIMAT0001592 Oryza sativa miR439d 14 20
osa-miR439c MIMAT0001591 Oryza sativa miR439c 14 20
osa-miR439b MIMAT0001590 Oryza sativa miR439b 14 20
osa-miR439a MIMAT0001589 Oryza sativa miR439a 14 20
ata-miR398f-5p MIMAT0037176 Aegilops tauschii miR398f-5p 12 80
ppc-miR-8337-3p MIMAT0033221 Pristionchus pacificus miR-8337-3p 12 80
ppc-miR-8263-5p MIMAT0033010 Pristionchus pacificus miR-8263-5p 12 80
ppe-miR6274b-5p MIMAT0031552 Prunus persica miR6274b-5p 12 80
nta-miR6158c MIMAT0024768 Nicotiana tabacum miR6158c 12 80
nta-miR6158b MIMAT0024767 Nicotiana tabacum miR6158b 12 80
nta-miR6158a MIMAT0024766 Nicotiana tabacum miR6158a 12 80
ame-miR-6039 MIMAT0023659 Apis mellifera miR-6039 12 80
osa-miR5818 MIMAT0023291 Oryza sativa miR5818 12 80
tur-miR-5729a-3p MIMAT0023055 Tetranychus urticae miR-5729a-3p 12 80
tur-miR-5729b-3p MIMAT0023039 Tetranychus urticae miR-5729b-3p 12 80
ath-miR5646 MIMAT0022410 Arabidopsis thaliana miR5646 12 80
gma-miR5372 MIMAT0021610 Glycine max miR5372 12 80
bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333 12 80
mtr-miR2614 MIMAT0013328 Medicago truncatula miR2614 12 80
sme-miR-2152 MIMAT0011233 Schmidtea mediterranea miR-2152 12 80
osa-miR166e-3p MIMAT0000639 Oryza sativa miR166e-3p 12 80
>mcmv-miR-m01-2-3p MIMAT0005535 Mouse cytomegalovirus
miR-m01-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 gttcgac 7
|||||||
Sbjct: 2 gttcgac 8
>osa-miR439i MIMAT0001598 Oryza sativa miR439i
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttcgac 7
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439h MIMAT0001596 Oryza sativa miR439h
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttcgac 7
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439g MIMAT0001595 Oryza sativa miR439g
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttcgac 7
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439f MIMAT0001594 Oryza sativa miR439f
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttcgac 7
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439e MIMAT0001593 Oryza sativa miR439e
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttcgac 7
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439d MIMAT0001592 Oryza sativa miR439d
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttcgac 7
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439c MIMAT0001591 Oryza sativa miR439c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttcgac 7
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439b MIMAT0001590 Oryza sativa miR439b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttcgac 7
|||||||
Sbjct: 8 gttcgac 2
>osa-miR439a MIMAT0001589 Oryza sativa miR439a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 gttcgac 7
|||||||
Sbjct: 8 gttcgac 2
>ata-miR398f-5p MIMAT0037176 Aegilops tauschii miR398f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgac 7
||||||
Sbjct: 8 ttcgac 3
>ppc-miR-8337-3p MIMAT0033221 Pristionchus pacificus miR-8337-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttcga 6
||||||
Sbjct: 1 gttcga 6
>ppc-miR-8263-5p MIMAT0033010 Pristionchus pacificus miR-8263-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgac 7
||||||
Sbjct: 8 ttcgac 3
>ppe-miR6274b-5p MIMAT0031552 Prunus persica miR6274b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgac 7
||||||
Sbjct: 3 ttcgac 8
>nta-miR6158c MIMAT0024768 Nicotiana tabacum miR6158c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttcga 6
||||||
Sbjct: 3 gttcga 8
>nta-miR6158b MIMAT0024767 Nicotiana tabacum miR6158b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttcga 6
||||||
Sbjct: 3 gttcga 8
>nta-miR6158a MIMAT0024766 Nicotiana tabacum miR6158a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttcga 6
||||||
Sbjct: 3 gttcga 8
>ame-miR-6039 MIMAT0023659 Apis mellifera miR-6039
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gttcga 6
||||||
Sbjct: 8 gttcga 3
>osa-miR5818 MIMAT0023291 Oryza sativa miR5818
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gttcga 6
||||||
Sbjct: 6 gttcga 1
>tur-miR-5729a-3p MIMAT0023055 Tetranychus urticae miR-5729a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gttcga 6
||||||
Sbjct: 8 gttcga 3
>tur-miR-5729b-3p MIMAT0023039 Tetranychus urticae miR-5729b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gttcga 6
||||||
Sbjct: 8 gttcga 3
>ath-miR5646 MIMAT0022410 Arabidopsis thaliana miR5646
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttcga 6
||||||
Sbjct: 1 gttcga 6
>gma-miR5372 MIMAT0021610 Glycine max miR5372
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttcga 6
||||||
Sbjct: 3 gttcga 8
>bmo-miR-3333 MIMAT0015520 Bombyx mori miR-3333
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttcga 6
||||||
Sbjct: 3 gttcga 8
>mtr-miR2614 MIMAT0013328 Medicago truncatula miR2614
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttcga 6
||||||
Sbjct: 3 gttcga 8
>sme-miR-2152 MIMAT0011233 Schmidtea mediterranea miR-2152
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 gttcga 6
||||||
Sbjct: 3 gttcga 8
>osa-miR166e-3p MIMAT0000639 Oryza sativa miR166e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 gttcga 6
||||||
Sbjct: 6 gttcga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 45
Number of extensions: 35
Number of successful extensions: 27
Number of sequences better than 100.0: 27
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 27
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
