VIRmiRNA

BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-13-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8294-3p MIMAT0033102 Pristionchus pacificus miR-8294-3p        14      27
mdo-miR-7294-3p MIMAT0028573 Monodelphis domestica miR-7294-3p         14      27
sko-miR-4833 MIMAT0020049 Saccoglossus kowalevskii miR-4833            14      27
ahy-miR3511-3p MIMAT0016335 Arachis hypogaea miR3511-3p                14      27

>ppc-miR-8294-3p MIMAT0033102 Pristionchus pacificus miR-8294-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagtaac 7
         |||||||
Sbjct: 2 tagtaac 8



>mdo-miR-7294-3p MIMAT0028573 Monodelphis domestica miR-7294-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagtaac 7
         |||||||
Sbjct: 1 tagtaac 7



>sko-miR-4833 MIMAT0020049 Saccoglossus kowalevskii miR-4833
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tagtaac 7
         |||||||
Sbjct: 2 tagtaac 8



>ahy-miR3511-3p MIMAT0016335 Arachis hypogaea miR3511-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tagtaac 7
         |||||||
Sbjct: 8 tagtaac 2



  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 88
Number of extensions: 84
Number of successful extensions: 57
Number of sequences better than 100.0: 4
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 4
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)