BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcv-miR-199a*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9246c MIMAT0034863 Eptesicus fuscus miR-9246c 14 20
mmu-miR-7081-3p MIMAT0028069 Mus musculus miR-7081-3p 14 20
hsa-miR-6810-3p MIMAT0027521 Homo sapiens miR-6810-3p 14 20
mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p 14 20
gma-miR408c-5p MIMAT0022993 Glycine max miR408c-5p 14 20
gma-miR408a-5p MIMAT0022992 Glycine max miR408a-5p 14 20
ame-miR-3718a MIMAT0018520 Apis mellifera miR-3718a 14 20
cbr-miR-56-5p MIMAT0011475 Caenorhabditis briggsae miR-56-5p 14 20
chi-miR-331-3p MIMAT0036146 Capra hircus miR-331-3p 12 80
nve-miR-2041b-5p MIMAT0035381 Nematostella vectensis miR-2041b-5p 12 80
eca-miR-8966 MIMAT0034501 Equus caballus miR-8966 12 80
eca-miR-8934 MIMAT0034463 Equus caballus miR-8934 12 80
eca-miR-185 MIMAT0034461 Equus caballus miR-185 12 80
cfa-miR-8832 MIMAT0034325 Canis familiaris miR-8832 12 80
cel-miR-8191-5p MIMAT0032795 Caenorhabditis elegans miR-8191-5p 12 80
oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus miR-7422b-5p 12 80
mdo-miR-505-5p MIMAT0028662 Monodelphis domestica miR-505-5p 12 80
mml-miR-6794-5p MIMAT0028294 Macaca mulatta miR-6794-5p 12 80
mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p 12 80
mmu-miR-7067-5p MIMAT0028038 Mus musculus miR-7067-5p 12 80
mmu-miR-7000-5p MIMAT0027902 Mus musculus miR-7000-5p 12 80
mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p 12 80
mmu-miR-6928-5p MIMAT0027756 Mus musculus miR-6928-5p 12 80
mmu-miR-6925-3p MIMAT0027751 Mus musculus miR-6925-3p 12 80
mmu-miR-6909-5p MIMAT0027718 Mus musculus miR-6909-5p 12 80
hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p 12 80
hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p 12 80
hsa-miR-6813-5p MIMAT0027526 Homo sapiens miR-6813-5p 12 80
hsa-miR-6794-5p MIMAT0027488 Homo sapiens miR-6794-5p 12 80
hsa-miR-6791-5p MIMAT0027482 Homo sapiens miR-6791-5p 12 80
hsa-miR-6756-3p MIMAT0027413 Homo sapiens miR-6756-3p 12 80
hsa-miR-6722-3p MIMAT0025854 Homo sapiens miR-6722-3p 12 80
gga-miR-6562-5p MIMAT0025832 Gallus gallus miR-6562-5p 12 80
cca-miR6107 MIMAT0024541 Cynara cardunculus miR6107 12 80
hco-miR-5930 MIMAT0023416 Haemonchus contortus miR-5930 12 80
gma-miR5043 MIMAT0021074 Glycine max miR5043 12 80
hsa-miR-4652-5p MIMAT0019716 Homo sapiens miR-4652-5p 12 80
tca-miR-3892-5p MIMAT0018884 Tribolium castaneum miR-3892-5p 12 80
ssc-miR-484 MIMAT0017974 Sus scrofa miR-484 12 80
hsa-miR-4292 MIMAT0016919 Homo sapiens miR-4292 12 80
cin-miR-4005b-3p MIMAT0016468 Ciona intestinalis miR-4005b-3p 12 80
hsa-miR-3144-5p MIMAT0015014 Homo sapiens miR-3144-5p 12 80
hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p 12 80
mmu-miR-3092-5p MIMAT0014905 Mus musculus miR-3092-5p 12 80
mmu-miR-3076-5p MIMAT0014860 Mus musculus miR-3076-5p 12 80
mmu-miR-3070-5p MIMAT0014846 Mus musculus miR-3070-5p 12 80
tgu-miR-2962-3p MIMAT0014621 Taeniopygia guttata miR-2962-3p 12 80
bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p 12 80
tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p 12 80
hsa-miR-1909-3p MIMAT0007883 Homo sapiens miR-1909-3p 12 80
mml-miR-210-5p MIMAT0026846 Macaca mulatta miR-210-5p 12 80
gga-miR-1774 MIMAT0007685 Gallus gallus miR-1774 12 80
gga-miR-1761 MIMAT0007668 Gallus gallus miR-1761 12 80
gga-miR-1577 MIMAT0007438 Gallus gallus miR-1577 12 80
oan-miR-155-3p MIMAT0006989 Ornithorhynchus anatinus miR-155-3p 12 80
mcmv-miR-m21-1 MIMAT0005540 Mouse cytomegalovirus miR-m21-1 12 80
ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853 12 80
ame-miR-125 MIMAT0001474 Apis mellifera miR-125 12 80
hsa-miR-210-5p MIMAT0026475 Homo sapiens miR-210-5p 12 80
>efu-miR-9246c MIMAT0034863 Eptesicus fuscus miR-9246c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcccctg 7
|||||||
Sbjct: 1 tcccctg 7
>mmu-miR-7081-3p MIMAT0028069 Mus musculus miR-7081-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcccctg 7
|||||||
Sbjct: 2 tcccctg 8
>hsa-miR-6810-3p MIMAT0027521 Homo sapiens miR-6810-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcccctg 7
|||||||
Sbjct: 1 tcccctg 7
>mmu-miR-6418-5p MIMAT0025173 Mus musculus miR-6418-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcccctg 7
|||||||
Sbjct: 8 tcccctg 2
>gma-miR408c-5p MIMAT0022993 Glycine max miR408c-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcccctg 7
|||||||
Sbjct: 7 tcccctg 1
>gma-miR408a-5p MIMAT0022992 Glycine max miR408a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcccctg 7
|||||||
Sbjct: 7 tcccctg 1
>ame-miR-3718a MIMAT0018520 Apis mellifera miR-3718a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcccctg 7
|||||||
Sbjct: 1 tcccctg 7
>cbr-miR-56-5p MIMAT0011475 Caenorhabditis briggsae miR-56-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcccctg 7
|||||||
Sbjct: 7 tcccctg 1
>chi-miR-331-3p MIMAT0036146 Capra hircus miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 1 cccctg 6
>nve-miR-2041b-5p MIMAT0035381 Nematostella vectensis
miR-2041b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 6 cccctg 1
>eca-miR-8966 MIMAT0034501 Equus caballus miR-8966
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>eca-miR-8934 MIMAT0034463 Equus caballus miR-8934
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 1 cccctg 6
>eca-miR-185 MIMAT0034461 Equus caballus miR-185
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 6 cccctg 1
>cfa-miR-8832 MIMAT0034325 Canis familiaris miR-8832
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 8 cccctg 3
>cel-miR-8191-5p MIMAT0032795 Caenorhabditis elegans miR-8191-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 1 cccctg 6
>oan-miR-7422b-5p MIMAT0029022 Ornithorhynchus anatinus
miR-7422b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>mdo-miR-505-5p MIMAT0028662 Monodelphis domestica miR-505-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>mml-miR-6794-5p MIMAT0028294 Macaca mulatta miR-6794-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 6 cccctg 1
>mmu-miR-7076-5p MIMAT0028058 Mus musculus miR-7076-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>mmu-miR-7067-5p MIMAT0028038 Mus musculus miR-7067-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 8 cccctg 3
>mmu-miR-7000-5p MIMAT0027902 Mus musculus miR-7000-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>mmu-miR-6986-5p MIMAT0027874 Mus musculus miR-6986-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>mmu-miR-6928-5p MIMAT0027756 Mus musculus miR-6928-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>mmu-miR-6925-3p MIMAT0027751 Mus musculus miR-6925-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcccct 6
||||||
Sbjct: 1 tcccct 6
>mmu-miR-6909-5p MIMAT0027718 Mus musculus miR-6909-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 6 cccctg 1
>hsa-miR-6887-3p MIMAT0027675 Homo sapiens miR-6887-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcccct 6
||||||
Sbjct: 1 tcccct 6
>hsa-miR-6824-5p MIMAT0027548 Homo sapiens miR-6824-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 8 tcccct 3
>hsa-miR-6813-5p MIMAT0027526 Homo sapiens miR-6813-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 6 cccctg 1
>hsa-miR-6794-5p MIMAT0027488 Homo sapiens miR-6794-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 6 cccctg 1
>hsa-miR-6791-5p MIMAT0027482 Homo sapiens miR-6791-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 1 cccctg 6
>hsa-miR-6756-3p MIMAT0027413 Homo sapiens miR-6756-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcccct 6
||||||
Sbjct: 1 tcccct 6
>hsa-miR-6722-3p MIMAT0025854 Homo sapiens miR-6722-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 8 cccctg 3
>gga-miR-6562-5p MIMAT0025832 Gallus gallus miR-6562-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>cca-miR6107 MIMAT0024541 Cynara cardunculus miR6107
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 8 tcccct 3
>hco-miR-5930 MIMAT0023416 Haemonchus contortus miR-5930
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 6 cccctg 1
>gma-miR5043 MIMAT0021074 Glycine max miR5043
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcccct 6
||||||
Sbjct: 3 tcccct 8
>hsa-miR-4652-5p MIMAT0019716 Homo sapiens miR-4652-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>tca-miR-3892-5p MIMAT0018884 Tribolium castaneum miR-3892-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 3 cccctg 8
>ssc-miR-484 MIMAT0017974 Sus scrofa miR-484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 8 cccctg 3
>hsa-miR-4292 MIMAT0016919 Homo sapiens miR-4292
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 1 cccctg 6
>cin-miR-4005b-3p MIMAT0016468 Ciona intestinalis miR-4005b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 8 tcccct 3
>hsa-miR-3144-5p MIMAT0015014 Homo sapiens miR-3144-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcccct 6
||||||
Sbjct: 1 tcccct 6
>mmu-miR-3092-5p MIMAT0014905 Mus musculus miR-3092-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>mmu-miR-3076-5p MIMAT0014860 Mus musculus miR-3076-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 8 cccctg 3
>mmu-miR-3070-5p MIMAT0014846 Mus musculus miR-3070-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 3 cccctg 8
>tgu-miR-2962-3p MIMAT0014621 Taeniopygia guttata miR-2962-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcccct 6
||||||
Sbjct: 3 tcccct 8
>bta-miR-2382-5p MIMAT0011930 Bos taurus miR-2382-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>tca-miR-14-5p MIMAT0019105 Tribolium castaneum miR-14-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 6 tcccct 1
>hsa-miR-1909-3p MIMAT0007883 Homo sapiens miR-1909-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 8 cccctg 3
>mml-miR-210-5p MIMAT0026846 Macaca mulatta miR-210-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 3 cccctg 8
>gga-miR-1774 MIMAT0007685 Gallus gallus miR-1774
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 1 cccctg 6
>gga-miR-1761 MIMAT0007668 Gallus gallus miR-1761
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 6 cccctg 1
>gga-miR-1577 MIMAT0007438 Gallus gallus miR-1577
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cccctg 7
||||||
Sbjct: 8 cccctg 3
>oan-miR-155-3p MIMAT0006989 Ornithorhynchus anatinus miR-155-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 1 cccctg 6
>mcmv-miR-m21-1 MIMAT0005540 Mouse cytomegalovirus miR-m21-1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcccct 6
||||||
Sbjct: 8 tcccct 3
>ath-miR853 MIMAT0004276 Arabidopsis thaliana miR853
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcccct 6
||||||
Sbjct: 1 tcccct 6
>ame-miR-125 MIMAT0001474 Apis mellifera miR-125
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 1 cccctg 6
>hsa-miR-210-5p MIMAT0026475 Homo sapiens miR-210-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cccctg 7
||||||
Sbjct: 3 cccctg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 101
Number of extensions: 93
Number of successful extensions: 59
Number of sequences better than 100.0: 59
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 59
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
