BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m21*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppy-miR-3173 MIMAT0024395 Pongo pygmaeus miR-3173 16 6.9
mdv2-miR-M21-5p MIMAT0004463 Mareks disease miR-M21-5p 16 6.9
ssc-miR-9820-5p MIMAT0037038 Sus scrofa miR-9820-5p 14 27
cfa-miR-8827 MIMAT0034319 Canis familiaris miR-8827 14 27
gra-miR8708 MIMAT0034095 Gossypium raimondii miR8708 14 27
gra-miR7504h MIMAT0034070 Gossypium raimondii miR7504h 14 27
gra-miR7504g MIMAT0034069 Gossypium raimondii miR7504g 14 27
mmu-miR-8100 MIMAT0031403 Mus musculus miR-8100 14 27
ghr-miR7504b MIMAT0029159 Gossypium hirsutum miR7504b 14 27
hsa-miR-7154-3p MIMAT0028219 Homo sapiens miR-7154-3p 14 27
mmu-miR-7011-5p MIMAT0027926 Mus musculus miR-7011-5p 14 27
mmu-miR-6942-5p MIMAT0027784 Mus musculus miR-6942-5p 14 27
mmu-miR-6916-5p MIMAT0027732 Mus musculus miR-6916-5p 14 27
hsa-miR-6894-5p MIMAT0027688 Homo sapiens miR-6894-5p 14 27
hsa-miR-6891-5p MIMAT0027682 Homo sapiens miR-6891-5p 14 27
gga-miR-6543-3p MIMAT0025827 Gallus gallus miR-6543-3p 14 27
mml-miR-3173 MIMAT0024331 Macaca mulatta miR-3173 14 27
ggo-miR-3173 MIMAT0024275 Gorilla gorilla miR-3173 14 27
ptr-miR-3173 MIMAT0024034 Pan troglodytes miR-3173 14 27
osa-miR5833 MIMAT0023308 Oryza sativa miR5833 14 27
mtr-miR5270b MIMAT0021296 Medicago truncatula miR5270b 14 27
mtr-miR5270a MIMAT0021295 Medicago truncatula miR5270a 14 27
mtr-miR5233 MIMAT0021218 Medicago truncatula miR5233 14 27
mtr-miR5215 MIMAT0021150 Medicago truncatula miR5215 14 27
hsa-miR-5193 MIMAT0021124 Homo sapiens miR-5193 14 27
tca-miR-3842-5p MIMAT0018728 Tribolium castaneum miR-3842-5p 14 27
bmo-miR-3393 MIMAT0015597 Bombyx mori miR-3393 14 27
hsa-miR-3173-3p MIMAT0015048 Homo sapiens miR-3173-3p 14 27
gga-miR-1680-5p MIMAT0007566 Gallus gallus miR-1680-5p 14 27
oan-miR-1421aj-5p MIMAT0007307 Ornithorhynchus anatinus miR-1421... 14 27
oan-miR-1421ah-5p MIMAT0007303 Ornithorhynchus anatinus miR-1421... 14 27
oan-miR-1421ac-5p MIMAT0007257 Ornithorhynchus anatinus miR-1421... 14 27
mdv2-miR-M25-5p MIMAT0004469 Mareks disease miR-M25-5p 14 27
hsa-miR-766-5p MIMAT0022714 Homo sapiens miR-766-5p 14 27
>ppy-miR-3173 MIMAT0024395 Pongo pygmaeus miR-3173
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcctcctt 8
||||||||
Sbjct: 8 tcctcctt 1
>mdv2-miR-M21-5p MIMAT0004463 Mareks disease miR-M21-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcctcctt 8
||||||||
Sbjct: 1 tcctcctt 8
>ssc-miR-9820-5p MIMAT0037038 Sus scrofa miR-9820-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 8 tcctcct 2
>cfa-miR-8827 MIMAT0034319 Canis familiaris miR-8827
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctcct 7
|||||||
Sbjct: 1 tcctcct 7
>gra-miR8708 MIMAT0034095 Gossypium raimondii miR8708
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>gra-miR7504h MIMAT0034070 Gossypium raimondii miR7504h
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>gra-miR7504g MIMAT0034069 Gossypium raimondii miR7504g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>mmu-miR-8100 MIMAT0031403 Mus musculus miR-8100
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>ghr-miR7504b MIMAT0029159 Gossypium hirsutum miR7504b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>hsa-miR-7154-3p MIMAT0028219 Homo sapiens miR-7154-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>mmu-miR-7011-5p MIMAT0027926 Mus musculus miR-7011-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>mmu-miR-6942-5p MIMAT0027784 Mus musculus miR-6942-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 8 tcctcct 2
>mmu-miR-6916-5p MIMAT0027732 Mus musculus miR-6916-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 8 tcctcct 2
>hsa-miR-6894-5p MIMAT0027688 Homo sapiens miR-6894-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>hsa-miR-6891-5p MIMAT0027682 Homo sapiens miR-6891-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctcctt 8
|||||||
Sbjct: 8 cctcctt 2
>gga-miR-6543-3p MIMAT0025827 Gallus gallus miR-6543-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctcctt 8
|||||||
Sbjct: 2 cctcctt 8
>mml-miR-3173 MIMAT0024331 Macaca mulatta miR-3173
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctcctt 8
|||||||
Sbjct: 8 cctcctt 2
>ggo-miR-3173 MIMAT0024275 Gorilla gorilla miR-3173
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctcctt 8
|||||||
Sbjct: 8 cctcctt 2
>ptr-miR-3173 MIMAT0024034 Pan troglodytes miR-3173
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctcctt 8
|||||||
Sbjct: 8 cctcctt 2
>osa-miR5833 MIMAT0023308 Oryza sativa miR5833
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctcct 7
|||||||
Sbjct: 1 tcctcct 7
>mtr-miR5270b MIMAT0021296 Medicago truncatula miR5270b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 8 tcctcct 2
>mtr-miR5270a MIMAT0021295 Medicago truncatula miR5270a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 8 tcctcct 2
>mtr-miR5233 MIMAT0021218 Medicago truncatula miR5233
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 8 tcctcct 2
>mtr-miR5215 MIMAT0021150 Medicago truncatula miR5215
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>hsa-miR-5193 MIMAT0021124 Homo sapiens miR-5193
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctcct 7
|||||||
Sbjct: 1 tcctcct 7
>tca-miR-3842-5p MIMAT0018728 Tribolium castaneum miR-3842-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>bmo-miR-3393 MIMAT0015597 Bombyx mori miR-3393
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 8 tcctcct 2
>hsa-miR-3173-3p MIMAT0015048 Homo sapiens miR-3173-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctcctt 8
|||||||
Sbjct: 8 cctcctt 2
>gga-miR-1680-5p MIMAT0007566 Gallus gallus miR-1680-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctcct 7
|||||||
Sbjct: 2 tcctcct 8
>oan-miR-1421aj-5p MIMAT0007307 Ornithorhynchus anatinus
miR-1421aj-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>oan-miR-1421ah-5p MIMAT0007303 Ornithorhynchus anatinus
miR-1421ah-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>oan-miR-1421ac-5p MIMAT0007257 Ornithorhynchus anatinus
miR-1421ac-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
>mdv2-miR-M25-5p MIMAT0004469 Mareks disease miR-M25-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cctcctt 8
|||||||
Sbjct: 1 cctcctt 7
>hsa-miR-766-5p MIMAT0022714 Homo sapiens miR-766-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctcct 7
|||||||
Sbjct: 7 tcctcct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 216
Number of extensions: 180
Number of successful extensions: 149
Number of sequences better than 100.0: 34
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 34
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
