BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h3*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-378-5p MIMAT0036193 Capra hircus miR-378-5p 14 20
efu-miR-9189a MIMAT0034888 Eptesicus fuscus miR-9189a 14 20
ssa-miR-8156-5p MIMAT0032734 Salmo salar miR-8156-5p 14 20
cgr-miR-378-5p MIMAT0023943 Cricetulus griseus miR-378-5p 14 20
bfl-miR-4872c MIMAT0020116 Branchiostoma floridae miR-4872c 14 20
cin-miR-4064-5p MIMAT0016616 Ciona intestinalis miR-4064-5p 14 20
bmo-miR-2805 MIMAT0013713 Bombyx mori miR-2805 14 20
hsv1-miR-H3-5p MIMAT0015279 Herpes Simplex miR-H3-5p 14 20
odi-miR-1474 MIMAT0006025 Oikopleura dioica miR-1474 14 20
rno-miR-378a-5p MIMAT0003378 Rattus norvegicus miR-378a-5p 14 20
mmu-miR-378a-5p MIMAT0000742 Mus musculus miR-378a-5p 14 20
hsa-miR-378a-5p MIMAT0000731 Homo sapiens miR-378a-5p 14 20
ata-miR1432-5p MIMAT0037214 Aegilops tauschii miR1432-5p 12 80
dvi-miR-iab-8-3p MIMAT0035617 Drosophila virilis miR-iab-8-3p 12 80
efu-miR-9189b MIMAT0034889 Eptesicus fuscus miR-9189b 12 80
efu-miR-9219 MIMAT0034811 Eptesicus fuscus miR-9219 12 80
efu-miR-9203b MIMAT0034778 Eptesicus fuscus miR-9203b 12 80
eca-miR-8971 MIMAT0034508 Equus caballus miR-8971 12 80
cfa-miR-8898 MIMAT0034408 Canis familiaris miR-8898 12 80
cfa-miR-8873a MIMAT0034373 Canis familiaris miR-8873a 12 80
gra-miR8725 MIMAT0034118 Gossypium raimondii miR8725 12 80
gra-miR8724 MIMAT0034117 Gossypium raimondii miR8724 12 80
atr-miR8602 MIMAT0033891 Amborella trichopoda miR8602 12 80
bbe-miR-92d-5p MIMAT0031724 Branchiostoma belcheri miR-92d-5p 12 80
rgl-miR7972 MIMAT0032261 Rehmannia glutinosa miR7972 12 80
prd-miR-7931-3p MIMAT0030711 Panagrellus redivivus miR-7931-3p 12 80
gga-miR-7460-3p MIMAT0029075 Gallus gallus miR-7460-3p 12 80
mdo-miR-7331-5p MIMAT0028668 Monodelphis domestica miR-7331-5p 12 80
mdo-miR-449b-3p MIMAT0028583 Monodelphis domestica miR-449b-3p 12 80
mml-miR-7185-5p MIMAT0028324 Macaca mulatta miR-7185-5p 12 80
mml-miR-7179-3p MIMAT0028303 Macaca mulatta miR-7179-3p 12 80
mml-miR-7177-5p MIMAT0028298 Macaca mulatta miR-7177-5p 12 80
bma-miR-5872 MIMAT0026371 Brugia malayi miR-5872 12 80
hsa-miR-6730-3p MIMAT0027362 Homo sapiens miR-6730-3p 12 80
ptr-miR-3664 MIMAT0024063 Pan troglodytes miR-3664 12 80
tur-miR-5729a-5p MIMAT0023054 Tetranychus urticae miR-5729a-5p 12 80
tur-miR-5729b-5p MIMAT0023038 Tetranychus urticae miR-5729b-5p 12 80
mmu-miR-344i MIMAT0022503 Mus musculus miR-344i 12 80
aca-miR-5440 MIMAT0022062 Anolis carolinensis miR-5440 12 80
hsa-miR-5000-3p MIMAT0021020 Homo sapiens miR-5000-3p 12 80
bfl-miR-92d-5p MIMAT0020079 Branchiostoma floridae miR-92d-5p 12 80
hsa-miR-4750-3p MIMAT0022979 Homo sapiens miR-4750-3p 12 80
hsa-miR-4732-3p MIMAT0019856 Homo sapiens miR-4732-3p 12 80
hsa-miR-3664-3p MIMAT0019220 Homo sapiens miR-3664-3p 12 80
hsa-miR-3653-5p MIMAT0032110 Homo sapiens miR-3653-5p 12 80
rno-miR-3583-3p MIMAT0017874 Rattus norvegicus miR-3583-3p 12 80
bta-miR-2432 MIMAT0012004 Bos taurus miR-2432 12 80
crm-miR-87-5p MIMAT0011581 Caenorhabditis remanei miR-87-5p 12 80
gga-miR-1676-5p MIMAT0007560 Gallus gallus miR-1676-5p 12 80
gga-miR-1672 MIMAT0007556 Gallus gallus miR-1672 12 80
oan-miR-1395-3p MIMAT0007197 Ornithorhynchus anatinus miR-1395-3p 12 80
mdv2-miR-M14-3p MIMAT0004452 Mareks disease miR-M14-3p 12 80
cre-miR919.2 MIMAT0004399 Chlamydomonas reinhardtii miR919.2 12 80
mmu-miR-691 MIMAT0003470 Mus musculus miR-691 12 80
dre-miR-461 MIMAT0001889 Danio rerio miR-461 12 80
>chi-miR-378-5p MIMAT0036193 Capra hircus miR-378-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgac 7
|||||||
Sbjct: 2 tcctgac 8
>efu-miR-9189a MIMAT0034888 Eptesicus fuscus miR-9189a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgac 7
|||||||
Sbjct: 1 tcctgac 7
>ssa-miR-8156-5p MIMAT0032734 Salmo salar miR-8156-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgac 7
|||||||
Sbjct: 2 tcctgac 8
>cgr-miR-378-5p MIMAT0023943 Cricetulus griseus miR-378-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgac 7
|||||||
Sbjct: 2 tcctgac 8
>bfl-miR-4872c MIMAT0020116 Branchiostoma floridae miR-4872c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgac 7
|||||||
Sbjct: 8 tcctgac 2
>cin-miR-4064-5p MIMAT0016616 Ciona intestinalis miR-4064-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgac 7
|||||||
Sbjct: 8 tcctgac 2
>bmo-miR-2805 MIMAT0013713 Bombyx mori miR-2805
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgac 7
|||||||
Sbjct: 2 tcctgac 8
>hsv1-miR-H3-5p MIMAT0015279 Herpes Simplex miR-H3-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgac 7
|||||||
Sbjct: 2 tcctgac 8
>odi-miR-1474 MIMAT0006025 Oikopleura dioica miR-1474
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctgac 7
|||||||
Sbjct: 8 tcctgac 2
>rno-miR-378a-5p MIMAT0003378 Rattus norvegicus miR-378a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgac 7
|||||||
Sbjct: 2 tcctgac 8
>mmu-miR-378a-5p MIMAT0000742 Mus musculus miR-378a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgac 7
|||||||
Sbjct: 2 tcctgac 8
>hsa-miR-378a-5p MIMAT0000731 Homo sapiens miR-378a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctgac 7
|||||||
Sbjct: 2 tcctgac 8
>ata-miR1432-5p MIMAT0037214 Aegilops tauschii miR1432-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>dvi-miR-iab-8-3p MIMAT0035617 Drosophila virilis miR-iab-8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>efu-miR-9189b MIMAT0034889 Eptesicus fuscus miR-9189b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctga 6
||||||
Sbjct: 3 tcctga 8
>efu-miR-9219 MIMAT0034811 Eptesicus fuscus miR-9219
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 8 tcctga 3
>efu-miR-9203b MIMAT0034778 Eptesicus fuscus miR-9203b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>eca-miR-8971 MIMAT0034508 Equus caballus miR-8971
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctga 6
||||||
Sbjct: 1 tcctga 6
>cfa-miR-8898 MIMAT0034408 Canis familiaris miR-8898
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>cfa-miR-8873a MIMAT0034373 Canis familiaris miR-8873a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctga 6
||||||
Sbjct: 1 tcctga 6
>gra-miR8725 MIMAT0034118 Gossypium raimondii miR8725
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 1 cctgac 6
>gra-miR8724 MIMAT0034117 Gossypium raimondii miR8724
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 1 cctgac 6
>atr-miR8602 MIMAT0033891 Amborella trichopoda miR8602
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>bbe-miR-92d-5p MIMAT0031724 Branchiostoma belcheri miR-92d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgac 7
||||||
Sbjct: 8 cctgac 3
>rgl-miR7972 MIMAT0032261 Rehmannia glutinosa miR7972
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgac 7
||||||
Sbjct: 8 cctgac 3
>prd-miR-7931-3p MIMAT0030711 Panagrellus redivivus miR-7931-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctga 6
||||||
Sbjct: 1 tcctga 6
>gga-miR-7460-3p MIMAT0029075 Gallus gallus miR-7460-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 1 cctgac 6
>mdo-miR-7331-5p MIMAT0028668 Monodelphis domestica miR-7331-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 3 cctgac 8
>mdo-miR-449b-3p MIMAT0028583 Monodelphis domestica miR-449b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgac 7
||||||
Sbjct: 8 cctgac 3
>mml-miR-7185-5p MIMAT0028324 Macaca mulatta miR-7185-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>mml-miR-7179-3p MIMAT0028303 Macaca mulatta miR-7179-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>mml-miR-7177-5p MIMAT0028298 Macaca mulatta miR-7177-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>bma-miR-5872 MIMAT0026371 Brugia malayi miR-5872
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 8 tcctga 3
>hsa-miR-6730-3p MIMAT0027362 Homo sapiens miR-6730-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 1 cctgac 6
>ptr-miR-3664 MIMAT0024063 Pan troglodytes miR-3664
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>tur-miR-5729a-5p MIMAT0023054 Tetranychus urticae miR-5729a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 3 cctgac 8
>tur-miR-5729b-5p MIMAT0023038 Tetranychus urticae miR-5729b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 3 cctgac 8
>mmu-miR-344i MIMAT0022503 Mus musculus miR-344i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgac 7
||||||
Sbjct: 8 cctgac 3
>aca-miR-5440 MIMAT0022062 Anolis carolinensis miR-5440
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>hsa-miR-5000-3p MIMAT0021020 Homo sapiens miR-5000-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>bfl-miR-92d-5p MIMAT0020079 Branchiostoma floridae miR-92d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgac 7
||||||
Sbjct: 8 cctgac 3
>hsa-miR-4750-3p MIMAT0022979 Homo sapiens miR-4750-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 1 cctgac 6
>hsa-miR-4732-3p MIMAT0019856 Homo sapiens miR-4732-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 3 cctgac 8
>hsa-miR-3664-3p MIMAT0019220 Homo sapiens miR-3664-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 8 tcctga 3
>hsa-miR-3653-5p MIMAT0032110 Homo sapiens miR-3653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctga 6
||||||
Sbjct: 3 tcctga 8
>rno-miR-3583-3p MIMAT0017874 Rattus norvegicus miR-3583-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 1 cctgac 6
>bta-miR-2432 MIMAT0012004 Bos taurus miR-2432
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>crm-miR-87-5p MIMAT0011581 Caenorhabditis remanei miR-87-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 3 cctgac 8
>gga-miR-1676-5p MIMAT0007560 Gallus gallus miR-1676-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cctgac 7
||||||
Sbjct: 1 cctgac 6
>gga-miR-1672 MIMAT0007556 Gallus gallus miR-1672
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cctgac 7
||||||
Sbjct: 6 cctgac 1
>oan-miR-1395-3p MIMAT0007197 Ornithorhynchus anatinus
miR-1395-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctga 6
||||||
Sbjct: 1 tcctga 6
>mdv2-miR-M14-3p MIMAT0004452 Mareks disease miR-M14-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
>cre-miR919.2 MIMAT0004399 Chlamydomonas reinhardtii miR919.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 8 tcctga 3
>mmu-miR-691 MIMAT0003470 Mus musculus miR-691
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcctga 6
||||||
Sbjct: 3 tcctga 8
>dre-miR-461 MIMAT0001889 Danio rerio miR-461
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcctga 6
||||||
Sbjct: 6 tcctga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 90
Number of successful extensions: 55
Number of sequences better than 100.0: 55
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 55
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
