BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h2*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR160a-3p MIMAT0027044 Brachypodium distachyon miR160a-3p 16 6.9
hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p 16 6.9
zma-miR160f-3p MIMAT0015209 Zea mays miR160f-3p 16 6.9
osa-miR160e-3p MIMAT0022867 Oryza sativa miR160e-3p 16 6.9
osa-miR160d-3p MIMAT0022854 Oryza sativa miR160d-3p 16 6.9
pma-miR-4606 MIMAT0019640 Petromyzon marinus miR-4606 14 27
tca-miR-3841-5p MIMAT0018726 Tribolium castaneum miR-3841-5p 14 27
cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p 14 27
zma-miR160d-3p MIMAT0015134 Zea mays miR160d-3p 14 27
>bdi-miR160a-3p MIMAT0027044 Brachypodium distachyon miR160a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcgcacgc 8
||||||||
Sbjct: 8 tcgcacgc 1
>hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgcacgc 8
||||||||
Sbjct: 1 tcgcacgc 8
>zma-miR160f-3p MIMAT0015209 Zea mays miR160f-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcgcacgc 8
||||||||
Sbjct: 8 tcgcacgc 1
>osa-miR160e-3p MIMAT0022867 Oryza sativa miR160e-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcgcacgc 8
||||||||
Sbjct: 8 tcgcacgc 1
>osa-miR160d-3p MIMAT0022854 Oryza sativa miR160d-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcgcacgc 8
||||||||
Sbjct: 8 tcgcacgc 1
>pma-miR-4606 MIMAT0019640 Petromyzon marinus miR-4606
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacgc 8
|||||||
Sbjct: 8 cgcacgc 2
>tca-miR-3841-5p MIMAT0018726 Tribolium castaneum miR-3841-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgcacg 7
|||||||
Sbjct: 7 tcgcacg 1
>cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgcacg 7
|||||||
Sbjct: 1 tcgcacg 7
>zma-miR160d-3p MIMAT0015134 Zea mays miR160d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgcacgc 8
|||||||
Sbjct: 7 cgcacgc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 58
Number of extensions: 44
Number of successful extensions: 40
Number of sequences better than 100.0: 9
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
