BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m30*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bta-miR-2450c MIMAT0012028 Bos taurus miR-2450c 14 20
mdv2-miR-M30-3p MIMAT0012546 Mareks disease miR-M30-3p 14 20
ptc-miR478c MIMAT0002078 Populus trichocarpa miR478c 14 20
ptc-miR478b MIMAT0002077 Populus trichocarpa miR478b 14 20
ptc-miR478a MIMAT0002076 Populus trichocarpa miR478a 14 20
eca-miR-8995 MIMAT0034534 Equus caballus miR-8995 12 80
gra-miR7486i MIMAT0034142 Gossypium raimondii miR7486i 12 80
ppc-miR-8217-5p MIMAT0032864 Pristionchus pacificus miR-8217-5p 12 80
prd-miR-7966a-5p MIMAT0030596 Panagrellus redivivus miR-7966a-5p 12 80
lco-miR-7642-3p MIMAT0029785 Leucosolenia complicata miR-7642-3p 12 80
sci-miR-7642-3p MIMAT0029784 Sycon ciliatum miR-7642-3p 12 80
ipu-miR-7553 MIMAT0029549 Ictalurus punctatus miR-7553 12 80
hsa-miR-6863 MIMAT0027627 Homo sapiens miR-6863 12 80
cca-miR6114-3p MIMAT0024554 Cynara cardunculus miR6114-3p 12 80
hsa-miR-4757-3p MIMAT0019902 Homo sapiens miR-4757-3p 12 80
ath-miR3932b-5p MIMAT0032113 Arabidopsis thaliana miR3932b-5p 12 80
gma-miR4371c MIMAT0018268 Glycine max miR4371c 12 80
tca-miR-3888-3p MIMAT0018875 Tribolium castaneum miR-3888-3p 12 80
cin-miR-4194-5p MIMAT0016812 Ciona intestinalis miR-4194-5p 12 80
cin-miR-4181-3p MIMAT0016795 Ciona intestinalis miR-4181-3p 12 80
hvt-miR-H17-5p MIMAT0012872 Herpesvirus of miR-H17-5p 12 80
ppc-miR-63e MIMAT0011677 Pristionchus pacificus miR-63e 12 80
rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p 12 80
hcmv-miR-US4-5p MIMAT0003341 Human cytomegalovirus miR-US4-5p 12 80
>bta-miR-2450c MIMAT0012028 Bos taurus miR-2450c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacgtg 7
|||||||
Sbjct: 7 tgacgtg 1
>mdv2-miR-M30-3p MIMAT0012546 Mareks disease miR-M30-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacgtg 7
|||||||
Sbjct: 2 tgacgtg 8
>ptc-miR478c MIMAT0002078 Populus trichocarpa miR478c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacgtg 7
|||||||
Sbjct: 1 tgacgtg 7
>ptc-miR478b MIMAT0002077 Populus trichocarpa miR478b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacgtg 7
|||||||
Sbjct: 1 tgacgtg 7
>ptc-miR478a MIMAT0002076 Populus trichocarpa miR478a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacgtg 7
|||||||
Sbjct: 1 tgacgtg 7
>eca-miR-8995 MIMAT0034534 Equus caballus miR-8995
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacgt 6
||||||
Sbjct: 3 tgacgt 8
>gra-miR7486i MIMAT0034142 Gossypium raimondii miR7486i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacgt 6
||||||
Sbjct: 3 tgacgt 8
>ppc-miR-8217-5p MIMAT0032864 Pristionchus pacificus miR-8217-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacgt 6
||||||
Sbjct: 6 tgacgt 1
>prd-miR-7966a-5p MIMAT0030596 Panagrellus redivivus
miR-7966a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacgtg 7
||||||
Sbjct: 6 gacgtg 1
>lco-miR-7642-3p MIMAT0029785 Leucosolenia complicata
miR-7642-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacgtg 7
||||||
Sbjct: 3 gacgtg 8
>sci-miR-7642-3p MIMAT0029784 Sycon ciliatum miR-7642-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacgtg 7
||||||
Sbjct: 3 gacgtg 8
>ipu-miR-7553 MIMAT0029549 Ictalurus punctatus miR-7553
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacgt 6
||||||
Sbjct: 1 tgacgt 6
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacgt 6
||||||
Sbjct: 8 tgacgt 3
>hsa-miR-6863 MIMAT0027627 Homo sapiens miR-6863
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacgtg 7
||||||
Sbjct: 3 gacgtg 8
>cca-miR6114-3p MIMAT0024554 Cynara cardunculus miR6114-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacgtg 7
||||||
Sbjct: 7 gacgtg 2
>hsa-miR-4757-3p MIMAT0019902 Homo sapiens miR-4757-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacgt 6
||||||
Sbjct: 3 tgacgt 8
>ath-miR3932b-5p MIMAT0032113 Arabidopsis thaliana miR3932b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacgt 6
||||||
Sbjct: 3 tgacgt 8
>gma-miR4371c MIMAT0018268 Glycine max miR4371c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacgtg 7
||||||
Sbjct: 1 gacgtg 6
>tca-miR-3888-3p MIMAT0018875 Tribolium castaneum miR-3888-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacgt 6
||||||
Sbjct: 3 tgacgt 8
>cin-miR-4194-5p MIMAT0016812 Ciona intestinalis miR-4194-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacgt 6
||||||
Sbjct: 1 tgacgt 6
>cin-miR-4181-3p MIMAT0016795 Ciona intestinalis miR-4181-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacgt 6
||||||
Sbjct: 8 tgacgt 3
>hvt-miR-H17-5p MIMAT0012872 Herpesvirus of miR-H17-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacgtg 7
||||||
Sbjct: 8 gacgtg 3
>ppc-miR-63e MIMAT0011677 Pristionchus pacificus miR-63e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacgt 6
||||||
Sbjct: 3 tgacgt 8
>rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacgtg 7
||||||
Sbjct: 8 gacgtg 3
>hcmv-miR-US4-5p MIMAT0003341 Human cytomegalovirus miR-US4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacgtg 7
||||||
Sbjct: 3 gacgtg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 42
Number of extensions: 37
Number of successful extensions: 25
Number of sequences better than 100.0: 24
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 25
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
