BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m1*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv1-miR-M1-3p MIMAT0005801 Mareks disease miR-M1-3p 16 6.9
ocu-miR-191-3p MIMAT0036336 Oryctolagus cuniculus miR-191-3p 14 27
efu-miR-191 MIMAT0034906 Eptesicus fuscus miR-191 14 27
bmo-miR-3314 MIMAT0015502 Bombyx mori miR-3314 14 27
mmu-miR-2139 MIMAT0011215 Mus musculus miR-2139 14 27
mml-miR-639 MIMAT0006481 Macaca mulatta miR-639 14 27
mml-miR-191-3p MIMAT0026834 Macaca mulatta miR-191-3p 14 27
oan-miR-1421i-1-3p MIMAT0006980 Ornithorhynchus anatinus miR-142... 14 27
hsa-miR-191-3p MIMAT0001618 Homo sapiens miR-191-3p 14 27
dme-miR-313-5p MIMAT0020839 Drosophila melanogaster miR-313-5p 14 27
>mdv1-miR-M1-3p MIMAT0005801 Mareks disease miR-M1-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgctgcgc 8
||||||||
Sbjct: 1 tgctgcgc 8
>ocu-miR-191-3p MIMAT0036336 Oryctolagus cuniculus miR-191-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctgcgc 8
|||||||
Sbjct: 1 gctgcgc 7
>efu-miR-191 MIMAT0034906 Eptesicus fuscus miR-191
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctgcgc 8
|||||||
Sbjct: 1 gctgcgc 7
>bmo-miR-3314 MIMAT0015502 Bombyx mori miR-3314
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgctgcg 7
|||||||
Sbjct: 8 tgctgcg 2
>mmu-miR-2139 MIMAT0011215 Mus musculus miR-2139
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctgcgc 8
|||||||
Sbjct: 2 gctgcgc 8
>mml-miR-639 MIMAT0006481 Macaca mulatta miR-639
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gctgcgc 8
|||||||
Sbjct: 8 gctgcgc 2
>mml-miR-191-3p MIMAT0026834 Macaca mulatta miR-191-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctgcgc 8
|||||||
Sbjct: 1 gctgcgc 7
>oan-miR-1421i-1-3p MIMAT0006980 Ornithorhynchus anatinus
miR-1421i-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctgcg 7
|||||||
Sbjct: 1 tgctgcg 7
>hsa-miR-191-3p MIMAT0001618 Homo sapiens miR-191-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctgcgc 8
|||||||
Sbjct: 1 gctgcgc 7
>dme-miR-313-5p MIMAT0020839 Drosophila melanogaster miR-313-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctgcg 7
|||||||
Sbjct: 1 tgctgcg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 416
Number of extensions: 405
Number of successful extensions: 301
Number of sequences better than 100.0: 10
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)